PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32084.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 298aa    MW: 32973.2 Da    PI: 8.5677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32084.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19105155256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  mrna32084.1-v1.0-hybrid 105 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 155
                              59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.77E-17104164No hitNo description
SMARTSM003801.0E-35105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-31105163IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22105162IPR016177DNA-binding domain
PROSITE profilePS5103223.301105162IPR001471AP2/ERF domain
PfamPF008472.8E-13106155IPR001471AP2/ERF domain
PRINTSPR003673.6E-10106117IPR001471AP2/ERF domain
PRINTSPR003673.6E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
METMQENYLP FEFTDLDIRS SLSNLILTGG TNTLDSIFSH FPQTPTAHVS EPLGSSVYLR  60
QRDLLQKFSD QTRLNGAVSR LPANPVQLPS CSSTTYLAPT TKKKLYRGVR QRHWGKWVAE  120
IRLPQNRMRV WLGTYDTAEA AAYAYDRAAY KLRGEYARLN FPNLKDPTKL DGSKLNAVRA  180
SVDAKIQAIC QKVKKAKKKN KSSSVKTEKP TIVDSSTTSS STSSHLTCYD GLGQELLSSA  240
TGSEDGVWRC ENSSTPSVSN DGPMSVAVAE MEMMEDLDSL ARMPSFDPEL IWEVLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21102162263ATERF1
3gcc_A9e-21102162263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32084.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298895.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W27e-65ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A3S8T9660.0A0A3S8T966_FRAAN; Transcription factor ERF3
STRINGXP_004298895.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-44ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]