PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna32028.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 37896.7 Da PI: 4.6921 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 111 | 161 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrd + r r +lg+++taeeAa +++a+ +l+g mrna32028.1-v1.0-hybrid 111 KKFRGVRQRP-WGKWAAEIRDpF-----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 161 59********.**********66.....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.46E-32 | 111 | 168 | No hit | No description |
Pfam | PF00847 | 8.0E-13 | 112 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 112 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 112 | 169 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.5E-35 | 112 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.196 | 112 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MNPAVKFSQH RNHTKLVSNS EAEGVRPRIV RISVTDGDAT DSSSDDEPET FFGRQRVKKY 60 VNEISIESCS REAEEEAAVC KSRTSRTVRK KTAGKTVAPV THRTLKPAPG KKFRGVRQRP 120 WGKWAAEIRD PFRRVRLWLG TYDTAEEAAM VYDNAAIQLR GPHALTNFHS PPAVTDEPDA 180 DIMSDVKPVI SYGYNSGEES HNTICSPTSV LRCPSPSNED VSSSPSPKHL QPKQEQQLQQ 240 VQDVQEDSCV SENFSELSDH TSFESFISDD IFDFQTTIPD FFEETSVFKE NNNSFCDFGN 300 FGDIFTESAM DFGFGSSGST TCDYFQDIGD LFASDPLVAL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 108 | 168 | 1 | 62 | ATERF1 |
3gcc_A | 1e-21 | 108 | 168 | 1 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna32028.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298872.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A3S8T910 | 0.0 | A0A3S8T910_FRAAN; Transcription factor ERF53 | ||||
STRING | XP_004298872.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 5e-48 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | mrna32028.1-v1.0-hybrid |