PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32020.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 482aa    MW: 52965.3 Da    PI: 10.2694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32020.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.3e-16413462255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++ GVr+++ +g+W+AeIr+p     +  +r +lg+f+tae+Aa  +++a+  l+g
  mrna32020.1-v1.0-hybrid 413 KFLGVRQRP-WGKWAAEIREP-----HsgRRLWLGTFDTAEDAAMVYDKAAVLLRG 462
                              688******.**********7.....337**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.72413470IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-28413470IPR001471AP2/ERF domain
CDDcd000182.85E-28413469No hitNo description
SMARTSM003803.2E-35413476IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-20413471IPR016177DNA-binding domain
PRINTSPR003679.1E-9414425IPR001471AP2/ERF domain
PfamPF008472.9E-9415458IPR001471AP2/ERF domain
PRINTSPR003679.1E-9436452IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MGQDVVKKLK VINGNAVPVG YGSPNSDAGH VVLGSSRRCS FQAQEKLCRP FVNLGQDVTN  60
RLKFKLKRME MRALGYEYPK DDARQVVLDA SKSYHQAPEK HAKILDSTGQ DGHAVPVRSD  120
SSKGDATHPV LRASKRRSFL QAREKHAKML DSTDHNGCAV PVGLDSRKGH ARHLVLEPSK  180
SFLQAQENRS KTLGNMGQDV TNKSKGLEGG AVSFGCDSPN DDARHLLLEA SKSFLEAHEK  240
LSEKLDNMGQ DLTKKLKFKL KLKKGLHGRA VPALDDGLKG ATGNLGLEAS KSVGDLVDGG  300
CNTEVHQHTK MEAKSIKPRL VRISVTDGDA TESSSDEEAE PLATGHRVKK FINEIMIESS  360
TKTDSGVWRS RTTRMWRKKM GGKSGLPATC RMLKAQTTWK KFCGVKEKAH KNKFLGVRQR  420
PWGKWAAEIR EPHSGRRLWL GTFDTAEDAA MVYDKAAVLL RGPDTYTNFS LPQVANEEGH  480
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17414471664ATERF1
3gcc_A1e-17414471664ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32020.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298864.10.0PREDICTED: uncharacterized protein LOC101302355 isoform X2
RefseqXP_011463950.10.0PREDICTED: uncharacterized protein LOC101302355 isoform X2
TrEMBLA0A3Q8TD720.0A0A3Q8TD72_FRAAN; Transcription factor ERF49
STRINGXP_004298864.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.15e-28cytokinin response factor 3