PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31986.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WOX | ||||||||
Protein Properties | Length: 193aa MW: 22102.1 Da PI: 8.7803 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.9 | 4e-09 | 84 | 121 | 2 | 38 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCT CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklg 38 r+R+t++++qle+Le+ +++ n +p +++ +e++k+l+ mrna31986.1-v1.0-hybrid 84 RQRWTPSNTQLEILERIYNEaNGTPGKQRVKEITKELS 121 89*****************99**************994 PP | |||||||
2 | Wus_type_Homeobox | 48.9 | 1.6e-16 | 83 | 125 | 2 | 44 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGk 44 ar+RWtP+++Q++iLe++y+++ tP k+++++it+eL+++G+ mrna31986.1-v1.0-hybrid 83 ARQRWTPSNTQLEILERIYNEANGTPGKQRVKEITKELSQHGQ 125 789***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 80 | 135 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.41E-5 | 83 | 130 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.9E-7 | 84 | 121 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEGQRRVLAM KLERPRTQNQ DGFCVMTEDQ VEQLRKQIAV YAVICEQLVD THKAFTAQQD 60 LAGMKMGNVY GDSMAFGGNK VTARQRWTPS NTQLEILERI YNEANGTPGK QRVKEITKEL 120 SQHGQNQIVS PKDKRQNLKT CSFEVLIQHV PYGWEWQVYV DDMPTESYEF TGAVEVSKKP 180 YQGGSRRRRV EI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31986.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465634.1 | 3e-88 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 5e-41 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A2P6PBJ9 | 3e-70 | A0A2P6PBJ9_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004300839.1 | 1e-84 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-41 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | mrna31986.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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