PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31955.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 420aa MW: 47631.9 Da PI: 9.4017 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.4 | 1.7e-15 | 6 | 97 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f +l+ s++l+ ++l +p +fa+++ + s+ +tl + g +W++ l + ++y++++GW++F + ++ g f++F+++g+s+ mrna31955.1-v1.0-hybrid 6 FEKLILSSTLQAKQLKIPENFAKKFRDE--FSTYVTLSVPGGHVWRIGL-KKAAENKYWFQDGWQDFIERYSIRIGYFLIFRYEGNSS 90 45677788889999********999755..8899***************.3444555****************************999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f v +f+ mrna31955.1-v1.0-hybrid 91 F--IVNIFN 97 9..999885 PP | |||||||
2 | B3 | 61.3 | 1.6e-19 | 299 | 390 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 vl ps+ + ++++lp fae++ +g++ ++l++ +g++W v++ yr+++ l++GW eF +n+L egD++vF+l +++ mrna31955.1-v1.0-hybrid 299 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQSADGKQWPVRCLYRGGR--AKLSQGWYEFTVENNLLEGDVCVFELLKTK 379 78899******************866743...5***************665555..66************************9999 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 e l+v vfr mrna31955.1-v1.0-hybrid 380 EIVLKVNVFRV 390 99999999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-21 | 2 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-22 | 2 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.49E-18 | 4 | 97 | No hit | No description |
PROSITE profile | PS50863 | 14.395 | 5 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-14 | 6 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-13 | 7 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-24 | 289 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-23 | 290 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.32E-23 | 294 | 389 | No hit | No description |
SMART | SM01019 | 2.8E-21 | 296 | 391 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.17 | 296 | 391 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-17 | 299 | 390 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MKRPYFEKLI LSSTLQAKQL KIPENFAKKF RDEFSTYVTL SVPGGHVWRI GLKKAAENKY 60 WFQDGWQDFI ERYSIRIGYF LIFRYEGNSS FIVNIFNLTT AEINYPPNAL SGTGGTVCSN 120 QYQVFEEMED EDSVEIMGSS PSSIVTNTMR DKLFGDVANQ LTPGKNYSPP SLQNLFNGAK 180 HNWTDAGKLH TPKVTGLQGN NSTQDNGTER KKSKKAVDEV KSCTPGEGTQ SDKKTVRKRR 240 KRDPNVQESS AQHEQDVEIR FRFYESASAR KRTVTAEERE RAVNLAKTFE PVNPFCRVVL 300 RPSYLYRGCI MYLPSCFAEK NLSGVSGFIK LQSADGKQWP VRCLYRGGRA KLSQGWYEFT 360 VENNLLEGDV CVFELLKTKE IVLKVNVFRV QEEDAGFVTQ SYGNQPSGQN IIQAIPLRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-71 | 262 | 392 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-71 | 262 | 392 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31955.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290393.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q8L3W1 | 1e-135 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2P6PN02 | 0.0 | A0A2P6PN02_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004290393.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-135 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna31955.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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