PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31952.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 292aa MW: 33319.2 Da PI: 9.9126 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59 | 8.3e-19 | 15 | 107 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ffkv +p ++++ l++p +f+e ++++ ++ tl ++ s sW+v + +k+ +++++++GW+eF k+n +++gDfvvF+++g mrna31952.1-v1.0-hybrid 15 FFKVIIPGYSTR--YLRIPPPFLELISNDLSGEATLNSNTCSEWSWNVGV--TKTIRSVYFKDGWQEFLKDNSVEDGDFVVFEYEG 96 788886666655..59*******999766444445555555556777777..********************************** PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++f +v++f++ mrna31952.1-v1.0-hybrid 97 NMNF--NVQIFDN 107 9999..****997 PP | |||||||
2 | B3 | 40.7 | 4.3e-13 | 210 | 289 | 14 | 97 |
T-EE--HHH.HTT---..--SEEEEEE.TTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeehggkkeesktltled.esgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + ++p +f +eh ++ ++ ++++ +g++W +vkl ++ + +++kGW++F++an++k+g ++ F+++ +e +lvv+++ mrna31952.1-v1.0-hybrid 210 CVYSFPTSFYKEHLSP--GNYEVVFLKiAEGKKWyKVKL--VRSIATAFMSKGWSKFARANQIKVGNVCAFEVV--EENKLVVHII 289 56689********433..445566555599999967899..88888899***********************65..5677799987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-25 | 8 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.53E-22 | 9 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.014 | 13 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-16 | 13 | 106 | No hit | No description |
SMART | SM01019 | 4.5E-15 | 15 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-16 | 15 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-15 | 193 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-15 | 194 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0015 | 202 | 291 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-11 | 212 | 289 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.18E-11 | 213 | 289 | No hit | No description |
PROSITE profile | PS50863 | 11.039 | 214 | 291 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MVRPKNGIKE KRPSFFKVII PGYSTRYLRI PPPFLELISN DLSGEATLNS NTCSEWSWNV 60 GVTKTIRSVY FKDGWQEFLK DNSVEDGDFV VFEYEGNMNF NVQIFDNSGC ERDCFPNIGT 120 PKISSFAEKK RHPSTPRKSD ICCSKCHLQL NSRKDSSDNI AKQRLPGRPR KSHIGCSKRH 180 PCPSNFRKVS AESFKSNYPH VTLAIKKTYC VYSFPTSFYK EHLSPGNYEV VFLKIAEGKK 240 WYKVKLVRSI ATAFMSKGWS KFARANQIKV GNVCAFEVVE ENKLVVHIIQ D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31952.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290392.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
Refseq | XP_011458369.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
Refseq | XP_011458370.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
Refseq | XP_011458371.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
TrEMBL | A0A2P6PMZ7 | 1e-157 | A0A2P6PMZ7_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004290392.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14202 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 3e-19 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna31952.1-v1.0-hybrid |