PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31952.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 292aa    MW: 33319.2 Da    PI: 9.9126
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31952.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.3e-1915107199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffkv +p ++++   l++p +f+e ++++  ++ tl  ++ s  sW+v +  +k+ +++++++GW+eF k+n +++gDfvvF+++g
  mrna31952.1-v1.0-hybrid  15 FFKVIIPGYSTR--YLRIPPPFLELISNDLSGEATLNSNTCSEWSWNVGV--TKTIRSVYFKDGWQEFLKDNSVEDGDFVVFEYEG 96 
                              788886666655..59*******999766444445555555556777777..********************************** PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                              +++f  +v++f++
  mrna31952.1-v1.0-hybrid  97 NMNF--NVQIFDN 107
                              9999..****997 PP

2B340.74.3e-132102891497
                              T-EE--HHH.HTT---..--SEEEEEE.TTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  14 grlvlpkkfaeehggkkeesktltled.esgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              +  ++p +f +eh ++  ++ ++++    +g++W +vkl   ++  + +++kGW++F++an++k+g ++ F+++  +e +lvv+++
  mrna31952.1-v1.0-hybrid 210 CVYSFPTSFYKEHLSP--GNYEVVFLKiAEGKKWyKVKL--VRSIATAFMSKGWSKFARANQIKVGNVCAFEVV--EENKLVVHII 289
                              56689********433..445566555599999967899..88888899***********************65..5677799987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-258110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-229110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.01413108IPR003340B3 DNA binding domain
CDDcd100171.04E-1613106No hitNo description
SMARTSM010194.5E-1515108IPR003340B3 DNA binding domain
PfamPF023622.9E-1615107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-15193290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-15194289IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0015202291IPR003340B3 DNA binding domain
PfamPF023626.0E-11212289IPR003340B3 DNA binding domain
CDDcd100179.18E-11213289No hitNo description
PROSITE profilePS5086311.039214291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVRPKNGIKE KRPSFFKVII PGYSTRYLRI PPPFLELISN DLSGEATLNS NTCSEWSWNV  60
GVTKTIRSVY FKDGWQEFLK DNSVEDGDFV VFEYEGNMNF NVQIFDNSGC ERDCFPNIGT  120
PKISSFAEKK RHPSTPRKSD ICCSKCHLQL NSRKDSSDNI AKQRLPGRPR KSHIGCSKRH  180
PCPSNFRKVS AESFKSNYPH VTLAIKKTYC VYSFPTSFYK EHLSPGNYEV VFLKIAEGKK  240
WYKVKLVRSI ATAFMSKGWS KFARANQIKV GNVCAFEVVE ENKLVVHIIQ D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31952.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290392.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_011458369.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_011458370.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_011458371.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A2P6PMZ71e-157A0A2P6PMZ7_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004290392.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-19B3 family protein