PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31945.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 555aa    MW: 64141 Da    PI: 9.7636
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31945.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.5e-1416109199
                              EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                              ffk+       +s  +++p++f++eh   +++  +  tl+l+ +s  s +vk+  +k+++ ++l++GW eF ++  L +++f+vF 
  mrna31945.1-v1.0-hybrid  16 FFKII--LPGRNSEYVRIPRRFVQEHivnKLP--KMATLKLKRSSEYSRNVKV--KKSGEDVFLKDGWLEFMRDACLGDKEFLVFI 95 
                              56666..445566679**********975555..5568999999999999999..******************************* PP

                              E-SSSEE..EEEEE-S CS
                       B3  84 ldgrsefelvvkvfrk 99 
                              ++g++ f   vkv++k
  mrna31945.1-v1.0-hybrid  96 YTGKMHF--SVKVYDK 109
                              **99999..8998887 PP
2B346.75.8e-153203981899
                              --HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  18 lpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                              +p +f+++h   +++  e  tl le +s  sW++k+  rk+++ ++l++GW+eF + n L +++f++F ++g+++f   v +f+k
  mrna31945.1-v1.0-hybrid 320 IPPNFTRKHianDLS--EWATLNLEGSSEGSWRMKV--RKSGKDVYLKEGWEEFLRVNCLGDKEFLMFFYHGEMQF--SVEIFNK 398
                              9********976555..5669***************..*********************************99999..9999987 PP
3B353.83.6e-174765541499
                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                              +++ +pk+f  eh ++  ++ +++l++++g+ Wev++    ++gr  +++GW+ F++a ++k +D ++F+l+g  e+++vv++++k
  mrna31945.1-v1.0-hybrid 476 HNVGIPKSFS-EHLSP--GQYEVSLKNSKGKPWEVRV--LENRGRLCISAGWRAFAEASQIKLRDKCTFELVG--EKRMVVHICSK 554
                              4589*****9.66333..6689***************..********************************98..4557****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1910112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-1910112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.2214110IPR003340B3 DNA binding domain
CDDcd100177.28E-1314108No hitNo description
SMARTSM010191.3E-1016110IPR003340B3 DNA binding domain
PfamPF023627.3E-1224109IPR003340B3 DNA binding domain
PRINTSPR009299.1E-5131142IPR017956AT hook, DNA-binding motif
SMARTSM0038419133145IPR017956AT hook, DNA-binding motif
PRINTSPR009299.1E-5195205IPR017956AT hook, DNA-binding motif
SMARTSM003840.28197209IPR017956AT hook, DNA-binding motif
Gene3DG3DSA:2.40.330.103.7E-5256318IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.476303399IPR003340B3 DNA binding domain
SMARTSM010196.9E-9310399IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-16319401IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-15319401IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-11320397No hitNo description
PfamPF023622.2E-12320398IPR003340B3 DNA binding domain
SMARTSM00384330422434IPR017956AT hook, DNA-binding motif
PROSITE profilePS5086312.407463554IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-15463552IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-16466552IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.9E-10468554IPR003340B3 DNA binding domain
PfamPF023621.4E-15476554IPR003340B3 DNA binding domain
CDDcd100171.46E-12480553No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MVRIPTNGIE EKNPSFFKII LPGRNSEYVR IPRRFVQEHI VNKLPKMATL KLKRSSEYSR  60
NVKVKKSGED VFLKDGWLEF MRDACLGDKE FLVFIYTGKM HFSVKVYDKN ACERMVFPEI  120
KTHQNTTSSR STKRPCGRPR KSSIGNSADV LKEVKEDEED CIKNTEKSSS KSTEMPTSES  180
RKRSPVRQKE TTSRSTKRPR GRPRKYPVTY KDSAAGKYIP KSEFDVLREV KEEEVEYQES  240
GELMKSELQY FTSKIHRLSQ VYMCKPFYVE NLSSRNYDFL FLKNSEGTEW YKVTLSRYRD  300
TAFMTKGWHA FAVANQVKKI PPNFTRKHIA NDLSEWATLN LEGSSEGSWR MKVRKSGKDV  360
YLKEGWEEFL RVNCLGDKEF LMFFYHGEMQ FSVEIFNKNG CKRMDFHNIK APQNSIVPNS  420
IERPKGRSRK CSKANSADNE VEVEDEEDYN DNPAQESAEL SESGVPQFTS IISLPHNVGI  480
PKSFSEHLSP GQYEVSLKNS KGKPWEVRVL ENRGRLCISA GWRAFAEASQ IKLRDKCTFE  540
LVGEKRMVVH ICSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196204KRPRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31945.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458356.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A2P6PN111e-152A0A2P6PN11_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004290390.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.16e-15B3 family protein