PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31920.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 549aa MW: 62677.8 Da PI: 9.4198 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.4 | 8.4e-22 | 26 | 111 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Yn+YA + GFsvrks+ ++ + n+ i r+fvCsk +++e++ e +++++ etr+ Cka++ + + dg w + +++++HnH mrna31920.1-v1.0-hybrid 26 LYNTYALRKGFSVRKSHIRRDTSNN-IRLREFVCSKAEFAQEQDVF-EPTKHKKLETRVACKAMISFSVK-DGIWTIPHINSDHNH 108 7****************99995555.****************9999.9*********************9.*************** PP FAR1 88 ela 90 ela mrna31920.1-v1.0-hybrid 109 ELA 111 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.4E-19 | 26 | 111 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.6E-15 | 150 | 213 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MEEIIEDDEE LKVGTQVHSD EEAYNLYNTY ALRKGFSVRK SHIRRDTSNN IRLREFVCSK 60 AEFAQEQDVF EPTKHKKLET RVACKAMISF SVKDGIWTIP HINSDHNHEL AKPEERQFLR 120 SGRKVTDACG QVFTSMKDAR RGETKAFFYI ANEVYNYLQK KRMKWWKQSF LESMGNKAPK 180 SIFTDEDKAM AKAVKIVFPG ASHRLCTWHI GKNAGKKIGS YLGNPEFKKQ FNHCLHGCSS 240 EIEFPVSWDN LIGISTHTME LIKFVHHYEK KIEETRLTEL EDDYRSKNGA HRPKVWTKML 300 SSAAKVFDIN NITTLPTQYV LKRWTKETKK GVVVNSDTSG GTSENLKTAR VLHLSELMHE 360 GNNVYDIASL TSSSTKIVKD LLTEAMKRLE KDKDTLYMLE NLKNFGAESG CSISGNETLV 420 LNPPNAKTKG IKNNRIKDVI ETNQRKKRTK EQENQENNDP KAPTDVSTFN NNQFGVPDTP 480 TFSNQFGVPN TPFYNQRMLS WPFGHPHSYV SYGQMPFSNQ NSNYSTTRLN LAPTATLTTD 540 PTLSQQPQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31920.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024188144.1 | 1e-152 | protein FAR1-RELATED SEQUENCE 4-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 9e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna31920.1-v1.0-hybrid |