PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna31907.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 197aa MW: 22174.3 Da PI: 8.1223 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.9 | 2.4e-15 | 120 | 194 | 16 | 97 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l++p +f ++h + ++ ++ ++g++W+vk+ + ++ l++GW +F +an++k gD+++Fkl++r ++lvv+v+ mrna31907.1-v1.0-hybrid 120 LRVPADFSRKHLTQ---GTYNLVKRSKGQKWKVKV--VRLCTSVKLSGGWAKFRRANQVKCGDICTFKLVER--KTLVVHVV 194 8899****999433...333456789*********..999999*************************9875..55588886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.882 | 1 | 53 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.1E-6 | 16 | 56 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-6 | 18 | 53 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-16 | 103 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-17 | 103 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.77E-12 | 107 | 193 | No hit | No description |
SMART | SM01019 | 1.9E-6 | 109 | 196 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.603 | 120 | 196 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-13 | 120 | 194 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MATFCTLLSP GISNEILEGW REFLEDHSIG DGELLIVRYD GRMQFSIQIF DKNHIERIDF 60 PDTEIQDENL AFANDSASVG NIPSCQSSEF KEINKGEAAA FTNSEFPSFT VTIPDYCYGL 120 RVPADFSRKH LTQGTYNLVK RSKGQKWKVK VVRLCTSVKL SGGWAKFRRA NQVKCGDICT 180 FKLVERKTLV VHVVPK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna31907.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292455.1 | 1e-137 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
TrEMBL | A0A2P6PMV8 | 2e-53 | A0A2P6PMV8_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004292455.1 | 1e-136 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34306 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-11 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna31907.1-v1.0-hybrid |