PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31903.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 202aa MW: 22941.4 Da PI: 10.3395 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.9 | 3.3e-12 | 14 | 85 | 1 | 76 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 ffkv + ++ +l++p +f+++ ++ ++ l+l+ +s sW+vk+ +k+++ +++++GW+eF + n ++e mrna31903.1-v1.0-hybrid 14 FFKVIL--PGYSTEQLRIPPQFLKHLRKDLSSKANLSLNMSSQCSWNVKV--TKTKNDVYFKDGWQEFLNNNSVDE 85 778884..4555567********666555556778***************..********************9875 PP | |||||||
2 | B3 | 37.9 | 3.1e-12 | 117 | 195 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS.-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesg.rsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + p f ++h + +++ + + + sg ++W +vkl + ++ ++++GW eF++++++ +gD++ F+l + e ++vv++++k mrna31903.1-v1.0-hybrid 117 STPTAFYSKHLS--AGNYKFAFVNISGgNKWyKVKL--VPSCQTAFMSAGWAEFARDKKIMVGDVCAFELLK--ENKMVVHILQK 195 557788888832..3556788888666566648999..*******************************876..56679999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-16 | 8 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-13 | 8 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.66E-8 | 12 | 85 | No hit | No description |
PROSITE profile | PS50863 | 7.26 | 12 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.11 | 14 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-10 | 14 | 85 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-15 | 97 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-14 | 98 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.30E-9 | 103 | 193 | No hit | No description |
SMART | SM01019 | 1.0E-4 | 105 | 196 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-9 | 119 | 195 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.855 | 119 | 196 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MVRKNGVNQK RPSFFKVILP GYSTEQLRIP PQFLKHLRKD LSSKANLSLN MSSQCSWNVK 60 VTKTKNDVYF KDGWQEFLNN NSVDEAADNT AKESAISFKS KYPHYKKAIN KTYCVYSTPT 120 AFYSKHLSAG NYKFAFVNIS GGNKWYKVKL VPSCQTAFMS AGWAEFARDK KIMVGDVCAF 180 ELLKENKMVV HILQKGSRSS Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31903.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024164887.1 | 1e-104 | B3 domain-containing protein Os01g0723500-like isoform X2 | ||||
TrEMBL | A0A2P6PMT2 | 1e-103 | A0A2P6PMT2_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004290392.1 | 9e-39 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14202 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 4e-11 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna31903.1-v1.0-hybrid |