PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31903.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 202aa    MW: 22941.4 Da    PI: 10.3395
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31903.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.3e-121485176
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                       B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76
                             ffkv +     ++ +l++p +f+++  ++  ++  l+l+ +s  sW+vk+  +k+++ +++++GW+eF + n ++e
  mrna31903.1-v1.0-hybrid 14 FFKVIL--PGYSTEQLRIPPQFLKHLRKDLSSKANLSLNMSSQCSWNVKV--TKTKNDVYFKDGWQEFLNNNSVDE 85
                             778884..4555567********666555556778***************..********************9875 PP

2B337.93.1e-121171951799
                              E--HHH.HTT---..--SEEEEEETTS.-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  17 vlpkkfaeehggkkeesktltledesg.rsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                              + p  f ++h +  +++ +  + + sg ++W +vkl    + ++ ++++GW eF++++++ +gD++ F+l +  e ++vv++++k
  mrna31903.1-v1.0-hybrid 117 STPTAFYSKHLS--AGNYKFAFVNISGgNKWyKVKL--VPSCQTAFMSAGWAEFARDKKIMVGDVCAFELLK--ENKMVVHILQK 195
                              557788888832..3556788888666566648999..*******************************876..56679999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-16885IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-13884IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-81285No hitNo description
PROSITE profilePS508637.2612113IPR003340B3 DNA binding domain
SMARTSM010190.1114100IPR003340B3 DNA binding domain
PfamPF023623.0E-101485IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-1597194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1498195IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-9103193No hitNo description
SMARTSM010191.0E-4105196IPR003340B3 DNA binding domain
PfamPF023621.2E-9119195IPR003340B3 DNA binding domain
PROSITE profilePS508639.855119196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVRKNGVNQK RPSFFKVILP GYSTEQLRIP PQFLKHLRKD LSSKANLSLN MSSQCSWNVK  60
VTKTKNDVYF KDGWQEFLNN NSVDEAADNT AKESAISFKS KYPHYKKAIN KTYCVYSTPT  120
AFYSKHLSAG NYKFAFVNIS GGNKWYKVKL VPSCQTAFMS AGWAEFARDK KIMVGDVCAF  180
ELLKENKMVV HILQKGSRSS Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31903.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024164887.11e-104B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBLA0A2P6PMT21e-103A0A2P6PMT2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004290392.19e-39(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-11related to vernalization1 1