PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna31843.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 761aa MW: 84788.8 Da PI: 6.5781

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna31843.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.1	1e-29	137	195	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers+++p++++it++ eHnh+ mrna31843.1-v1.0-hybrid 137 SDVWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSNSNPELFIITFTAEHNHD 195 79***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.6E-31	122	197	IPR003657	WRKY domain
PROSITE profile	PS50811	33.327	131	197	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-25	131	197	IPR003657	WRKY domain
SMART	SM00774	5.0E-34	136	196	IPR003657	WRKY domain
Pfam	PF03106	1.6E-24	138	195	IPR003657	WRKY domain
SuperFamily	SSF48208	8.85E-152	303	759	IPR008928	Six-hairpin glycosidase-like
Gene3D	G3DSA:1.50.10.10	4.4E-163	307	758	IPR012341	Six-hairpin glycosidase
Pfam	PF00759	2.4E-136	308	753	IPR001701	Glycoside hydrolase family 9

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
MENSWDLQAV VRGCNNNLEG FANTMEFSQS SCVGFAPATI EEDDDIFRTF PQLFDTTTAL 60 DELEELYKPF YPNLQPISPI IPNPTPAASV LQEVAKEEKE EPKKLKSLKE SSPICKRSRK 120 NQSKRVVKEV KEQDLFSDVW AWRKYGQKPI KGSPYPRSYY RCSSSKGCSA RKQVERSNSN 180 PELFIITFTA EHNHDHPTRR NSLAGSTRTK FPKSQNNEKS KHAFVPVKEE AHRLLEEDEV 240 SQESATDMML GDEAVPSFED FDRKLEELNE LMAEPVMTDD FFSDQYLSDS YFPSSWFLGH 300 SSISAIDYKD ALGKSILFFE GQRSGKLPNS QRVVWRGDSA LSDGQLEGVN LTGGYYDAGD 360 NVKFGWPMAY SVSLLSWSLI EYQQQISSAK QLAYLQGAIR WGTEFIIKAH PSPTTFYTQV 420 GDGNADHQCW ERPEDMDTSR KLYKITSSSP GSEAAAEAAA ALAAASIVFK TVDSTYSAKL 480 LRYSKSLFDL ADKYRGSYQV SCPFYCSYSG YQDELLWAAA WLYKASGNRS YLSYVLNNQG 540 WSQAMSEFSW DNKFVGAQTI LAKEYHAGNT NLLKYKTDAE SFICAVMPGS SSSQVQRTPG 600 GLLFIRDSSN LQYVTSSTLV LFIYSKTISS TQTRGVQCGS MFFSAEKIKA FAKSQVDYIL 660 GANPKKMSYM VGFGTTYPTK VHHRGSSIPS IKKVRTKVDC NGGYTYYNSG SPNPNTHVGA 720 IVGGPDVNDQ FQNARSDYSH SEPTTYINAA FVGSAAALLA *

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

MENSWDLQAV VRGCNNNLEG FANTMEFSQS SCVGFAPATI EEDDDIFRTF PQLFDTTTAL  60
DELEELYKPF YPNLQPISPI IPNPTPAASV LQEVAKEEKE EPKKLKSLKE SSPICKRSRK  120
NQSKRVVKEV KEQDLFSDVW AWRKYGQKPI KGSPYPRSYY RCSSSKGCSA RKQVERSNSN  180
PELFIITFTA EHNHDHPTRR NSLAGSTRTK FPKSQNNEKS KHAFVPVKEE AHRLLEEDEV  240
SQESATDMML GDEAVPSFED FDRKLEELNE LMAEPVMTDD FFSDQYLSDS YFPSSWFLGH  300
SSISAIDYKD ALGKSILFFE GQRSGKLPNS QRVVWRGDSA LSDGQLEGVN LTGGYYDAGD  360
NVKFGWPMAY SVSLLSWSLI EYQQQISSAK QLAYLQGAIR WGTEFIIKAH PSPTTFYTQV  420
GDGNADHQCW ERPEDMDTSR KLYKITSSSP GSEAAAEAAA ALAAASIVFK TVDSTYSAKL  480
LRYSKSLFDL ADKYRGSYQV SCPFYCSYSG YQDELLWAAA WLYKASGNRS YLSYVLNNQG  540
WSQAMSEFSW DNKFVGAQTI LAKEYHAGNT NLLKYKTDAE SFICAVMPGS SSSQVQRTPG  600
GLLFIRDSSN LQYVTSSTLV LFIYSKTISS TQTRGVQCGS MFFSAEKIKA FAKSQVDYIL  660
GANPKKMSYM VGFGTTYPTK VHHRGSSIPS IKKVRTKVDC NGGYTYYNSG SPNPNTHVGA  720
IVGGPDVNDQ FQNARSDYSH SEPTTYINAA FVGSAAALLA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ks8_A	1e-109	305	760	2	430	Endo-b-1,4-glucanase
1ksc_A	1e-109	305	760	2	430	Endo-b-1,4-glucanase
1ksd_A	1e-109	305	760	2	430	Endo-b-1,4-glucanase
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ripening fruit process.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna31843.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298838.1	0.0	PREDICTED: endoglucanase 20-like
Swissprot	P22503	0.0	GUN_PHAVU; Endoglucanase
TrEMBL	A0A2P6P6L7	0.0	A0A2P6P6L7_ROSCH; Endoglucanase
STRING	XP_004298838.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23550.1	1e-40	WRKY family protein

Link Out ? help Back to Top
Phytozome	mrna31843.1-v1.0-hybrid

Publications ? help Back to Top
Tucker ML,Sexton R,Del Campillo E,Lewis LN Bean abscission cellulase : characterization of a cDNA clone and regulation of gene expression by ethylene and auxin. Plant Physiol., 1988. 88(4): p. 1257-62 [PMID:16666452] Tucker ML,Milligan SB Sequence analysis and comparison of avocado fruit and bean abscission cellulases. Plant Physiol., 1991. 95(3): p. 928-33 [PMID:16668074]