PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31797.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21298 Da PI: 7.8382 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 144.1 | 4.1e-45 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q mrna31797.1-v1.0-hybrid 11 PCAACKFLRRKCMPGCIFAPYFPPEDPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQ 96 7************************************************************************************* PP DUF260 87 leqlkaelallke 99 +++l++el+++++ mrna31797.1-v1.0-hybrid 97 VQRLQKELDAANA 109 ********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.871 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-44 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MASSSSSYNS PCAACKFLRR KCMPGCIFAP YFPPEDPQKF ANVHKIFGAS NVTKLLNDLL 60 PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVQRL QKELDAANAD LIRYACNEII 120 ATPGVNPVLQ QQMTPRRRSI DHHQFYHQQG GATIPPPAAN FQVPYNLPWN VDHQNRTSGD 180 QINEGGGGGE GGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-70 | 2 | 129 | 2 | 129 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-70 | 2 | 129 | 2 | 129 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31797.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298984.1 | 1e-144 | PREDICTED: protein LATERAL ORGAN BOUNDARIES-like | ||||
Refseq | XP_011464037.1 | 1e-144 | PREDICTED: protein LATERAL ORGAN BOUNDARIES-like | ||||
Swissprot | Q9FML4 | 7e-76 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A2P6P5M4 | 1e-125 | A0A2P6P5M4_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004298984.1 | 1e-144 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 1e-75 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna31797.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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