PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31658.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 691aa MW: 78700.1 Da PI: 5.6486 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.6 | 2e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWk mrna31658.1-v1.0-hybrid 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWK 90 79****************************.99***************6434555777**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++v s ++++vg+kktLv+y+grap+g +tdWvmheyrl mrna31658.1-v1.0-hybrid 91 ATGKDRKVNS-QTRAVGMKKTLVYYRGRAPHGIRTDWVMHEYRL 133 **********.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-64 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.691 | 6 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH 120 GIRTDWVMHE YRLDERECET AQGLQVQDAY ALCRIFKKTA TGPKIGEHYG STSSTTNYQL 180 MTSDHHSSSV ELYSDSRCDH QDFESSRYNN QMAMNNTPCS SNMVQTSSSS SLDHMGRKRD 240 GKWSQFLSKD AFNSFSSFPN QGAIPYPPSK VDIALECARL QHRLTLPPLE VEDFPHVGFT 300 DFKNLQYSDP GLEGTGTETD ALQEILSVAH VSQEMINQSN NFADQTWATA NYAPGANDFS 360 FMVDRDAHYN QIITTHHDMN PMRYVDKPWE NSYIRSIEIG DLEDDDFRTD NTTENLRWIG 420 MSDKDLEKSF TEEHKIVPIQ NIASFRREEH GHQVEGDQTE HHSDMIKEFN DGETNDFSLG 480 FINDDPDENF LQDGNIETDY SSSPSFEVIE EIQVNHGMFV STRQVADTFF HQIMPSETVK 540 VHLNPVLVHS YLVEKVDDAQ QNSKNTRGSF FEMFKEFVME KFVGVVISMN PWRKMASAMV 600 CAVTLLLMHT IYVGEHLEDE KLRDAFTATT AIVVEEKGSS NIISKKKKEV CLVNIRGGSS 660 CSLFLKKIGI FLTVSLALCT VWANHSIITS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-57 | 2 | 158 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31658.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011469065.1 | 0.0 | PREDICTED: NAC domain-containing protein 86 isoform X1 | ||||
Refseq | XP_011469072.1 | 0.0 | PREDICTED: NAC domain-containing protein 86 isoform X1 | ||||
TrEMBL | A0A2P6RFU4 | 0.0 | A0A2P6RFU4_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004289565.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4421 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-158 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | mrna31658.1-v1.0-hybrid |