PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31658.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 691aa    MW: 78700.1 Da    PI: 5.6486
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31658.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.62e-5661331128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWk
  mrna31658.1-v1.0-hybrid   6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWK 90 
                              79****************************.99***************6434555777**************************** PP

                      NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              atgkd++v s ++++vg+kktLv+y+grap+g +tdWvmheyrl
  mrna31658.1-v1.0-hybrid  91 ATGKDRKVNS-QTRAVGMKKTLVYYRGRAPHGIRTDWVMHEYRL 133
                              **********.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-644158IPR003441NAC domain
PROSITE profilePS5100561.6916158IPR003441NAC domain
PfamPF023657.6E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH  120
GIRTDWVMHE YRLDERECET AQGLQVQDAY ALCRIFKKTA TGPKIGEHYG STSSTTNYQL  180
MTSDHHSSSV ELYSDSRCDH QDFESSRYNN QMAMNNTPCS SNMVQTSSSS SLDHMGRKRD  240
GKWSQFLSKD AFNSFSSFPN QGAIPYPPSK VDIALECARL QHRLTLPPLE VEDFPHVGFT  300
DFKNLQYSDP GLEGTGTETD ALQEILSVAH VSQEMINQSN NFADQTWATA NYAPGANDFS  360
FMVDRDAHYN QIITTHHDMN PMRYVDKPWE NSYIRSIEIG DLEDDDFRTD NTTENLRWIG  420
MSDKDLEKSF TEEHKIVPIQ NIASFRREEH GHQVEGDQTE HHSDMIKEFN DGETNDFSLG  480
FINDDPDENF LQDGNIETDY SSSPSFEVIE EIQVNHGMFV STRQVADTFF HQIMPSETVK  540
VHLNPVLVHS YLVEKVDDAQ QNSKNTRGSF FEMFKEFVME KFVGVVISMN PWRKMASAMV  600
CAVTLLLMHT IYVGEHLEDE KLRDAFTATT AIVVEEKGSS NIISKKKKEV CLVNIRGGSS  660
CSLFLKKIGI FLTVSLALCT VWANHSIITS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-57215811168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31658.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469065.10.0PREDICTED: NAC domain-containing protein 86 isoform X1
RefseqXP_011469072.10.0PREDICTED: NAC domain-containing protein 86 isoform X1
TrEMBLA0A2P6RFU40.0A0A2P6RFU4_ROSCH; Putative transcription factor NAM family
STRINGXP_004289565.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-158NAC domain containing protein 28