PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31590.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 331aa    MW: 37277.9 Da    PI: 4.8026
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31590.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-092582912255
                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                               +yp++e++ +L+  +gL++rq+ +WF N+R ++
  mrna31590.1-v1.0-hybrid 258 WPYPTEEQKMQLSVATGLDQRQINNWFINQRKRH 291
                              58*****************************885 PP
2ELK31.24.9e-11211232122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELK++Ll+KYsgyLg Lk+ F+
  mrna31590.1-v1.0-hybrid 211 ELKDMLLHKYSGYLGKLKKDFL 232
                              9********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.9E-1862106IPR005540KNOX1
PfamPF037909.4E-1964102IPR005540KNOX1
SMARTSM012565.1E-23110161IPR005541KNOX2
PfamPF037911.5E-22113160IPR005541KNOX2
SMARTSM011881700119139IPR005539ELK domain
PROSITE profilePS512139.778211231IPR005539ELK domain
SMARTSM011882.7E-5211232IPR005539ELK domain
PfamPF037896.0E-7211232IPR005539ELK domain
PROSITE profilePS5007112.131231294IPR001356Homeobox domain
SuperFamilySSF466895.56E-19233303IPR009057Homeodomain-like
SMARTSM003892.3E-12233298IPR001356Homeobox domain
CDDcd000867.15E-14235295No hitNo description
Gene3DG3DSA:1.10.10.605.7E-27236296IPR009057Homeodomain-like
PfamPF059202.0E-16251290IPR008422Homeobox KN domain
PROSITE patternPS000270269292IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEDFYRLNTM NMISSSSGNV NQVENGTRTT TEGGAAYRGS PIIVSHRNFN MLQFETDQGM  60
TELMKTQIAN HPRYPDLVSA YIDCQKVGAP PEIKSLLEEV GRLSFPTSTC RSEIGADPEL  120
DEFMDTYCGV LHTYKEELSK PVDEATTFLN NIELQLSDLC KGTFQKNNCD LQAAVPLPDE  180
AVGSSEEEFS YGEMEAAEGQ DTSAFRACDR ELKDMLLHKY SGYLGKLKKD FLKSRKKGKL  240
PKDARSALMD WWNTHYRWPY PTEEQKMQLS VATGLDQRQI NNWFINQRKR HWKPSEDMKF  300
ALMEGVSGSI NGEGGPSLLC DPGFGHDDIM *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31590.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4658320.0GQ465832.1 Fragaria x ananassa class I knox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302238.10.0PREDICTED: homeobox protein knotted-1-like 1 isoform X1
SwissprotQ9FP295e-96KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLD3JZ170.0D3JZ17_FRAVE; KNOX
STRINGXP_004302238.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-86KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]