PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31474.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 404aa    MW: 44609.7 Da    PI: 7.6411
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31474.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53151421128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeel+++yL+ kv +  +     i+evd++++ePw+Lp  +k ++kewyfFs rd+ky+tg r+nrat +gyWkat
  mrna31474.1-v1.0-hybrid  15 LPPGFRFHPTDEELITFYLASKVYNGAFCG-VDIAEVDLNRCEPWELPDVAKMGDKEWYFFSLRDRKYPTGLRTNRATGAGYWKAT 99 
                              79*************************877.34***************888889******************************** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              gkdkev+s+ +g+l g+kktLvfykgrap+g+kt+Wvmheyrl
  mrna31474.1-v1.0-hybrid 100 GKDKEVYSAsSGALLGMKKTLVFYKGRAPRGQKTKWVMHEYRL 142
                              *******9978889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-6310165IPR003441NAC domain
PROSITE profilePS5100558.66615165IPR003441NAC domain
PfamPF023657.4E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSELLGREEV NEQGLPPGFR FHPTDEELIT FYLASKVYNG AFCGVDIAEV DLNRCEPWEL  60
PDVAKMGDKE WYFFSLRDRK YPTGLRTNRA TGAGYWKATG KDKEVYSASS GALLGMKKTL  120
VFYKGRAPRG QKTKWVMHEY RLDGDFSSYR HTCKDEWVIC RTHNKSGDKK NPMQAQGQGE  180
GQQSNFLQQV VEAASASSRT GCSLPPLLEF QSQTTHQNPS FVQSPSLLRM QENDLMKSRN  240
QLFQPPSSSS SSSSSSAAAL QSMLFKSFLF PHQDQAGTTG TGTGAPKRCK AEATNLPHFQ  300
TAPLNVANFN YLMEKNHSHV QPNGQDSLLQ YHHHPRSSLS FDDFHFYNGV LGLSTSAATA  360
SVDAETASSS ASNGGFNRAG FQTMLDPLIK LPAAESSWNQ DIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-52816510165NO APICAL MERISTEM PROTEIN
1ut4_B6e-52816510165NO APICAL MERISTEM PROTEIN
1ut7_A6e-52816510165NO APICAL MERISTEM PROTEIN
1ut7_B6e-52816510165NO APICAL MERISTEM PROTEIN
3swm_A6e-52816513168NAC domain-containing protein 19
3swm_B6e-52816513168NAC domain-containing protein 19
3swm_C6e-52816513168NAC domain-containing protein 19
3swm_D6e-52816513168NAC domain-containing protein 19
3swp_A6e-52816513168NAC domain-containing protein 19
3swp_B6e-52816513168NAC domain-containing protein 19
3swp_C6e-52816513168NAC domain-containing protein 19
3swp_D6e-52816513168NAC domain-containing protein 19
3ulx_A7e-5271687171Stress-induced transcription factor NAC1
4dul_A6e-52816510165NAC domain-containing protein 19
4dul_B6e-52816510165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31474.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301620.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2
TrEMBLA0A2P6PBQ80.0A0A2P6PBQ8_ROSCH; Putative transcription factor NAM family
STRINGXP_004301620.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-99NAC family protein