PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna31429.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 387aa MW: 43049.4 Da PI: 4.5256

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna31429.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.3	6.4e-23	299	348	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+dl++yF+l+i++A+ +L c+Tv+KriCR++G++RWP Rkiks+ mrna31429.1-v1.0-hybrid 299 AKMKLDDLRAYFHLTIEEASEQLRFCPTVVKRICRKFGVSRWPARKIKSI 348 7899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.472	288	368	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-21	301	348	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MEGVTDSPWA VVPYHDPYDH EVPEVLSFVN DSPDQTLDAL FDGGVVPSSP HQCPVPHFDD 60 GIQDFPMSPM WDFSNNYNGG GNNNFSVPED PPSQCSGGGG EPAVDQNSGL GFGQNVMPPP 120 VVAPPPPIIN SGCCGCQALR EIVHFSRDYI MTLKIHGRLG AICHAIQESR ANYLYDSGVS 180 SEPHYQNLDF CNKGIEEVKQ CLTQYCLERK VEGYIMQQDP LQAFYQTLCV GMDGEWDDIL 240 CYPDEFIPED FDATDDFISP NSERVAEMDQ PATVATVNTI GKGPRLPRYS LAEQRERAAK 300 MKLDDLRAYF HLTIEEASEQ LRFCPTVVKR ICRKFGVSRW PARKIKSIEK RISSLRPLLN 360 SCSESTRGHV AAEIERLETE VARLVP*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MEGVTDSPWA VVPYHDPYDH EVPEVLSFVN DSPDQTLDAL FDGGVVPSSP HQCPVPHFDD  60
GIQDFPMSPM WDFSNNYNGG GNNNFSVPED PPSQCSGGGG EPAVDQNSGL GFGQNVMPPP  120
VVAPPPPIIN SGCCGCQALR EIVHFSRDYI MTLKIHGRLG AICHAIQESR ANYLYDSGVS  180
SEPHYQNLDF CNKGIEEVKQ CLTQYCLERK VEGYIMQQDP LQAFYQTLCV GMDGEWDDIL  240
CYPDEFIPED FDATDDFISP NSERVAEMDQ PATVATVNTI GKGPRLPRYS LAEQRERAAK  300
MKLDDLRAYF HLTIEEASEQ LRFCPTVVKR ICRKFGVSRW PARKIKSIEK RISSLRPLLN  360
SCSESTRGHV AAEIERLETE VARLVP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna31429.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301476.1	0.0	PREDICTED: uncharacterized protein LOC101302563
TrEMBL	A0A2P6PER9	0.0	A0A2P6PER9_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004301476.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	mrna31429.1-v1.0-hybrid