PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31407.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 165aa MW: 19126.6 Da PI: 8.2518 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.4e-17 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g+W++++ g++R++k+c+ rw++yl mrna31407.1-v1.0-hybrid 5 KGSWTKEEDHLLRNYIEKHGEGRWHKVPLQAGLNRCRKSCRMRWLNYL 52 799*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.787 | 1 | 56 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 2 | 55 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-14 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 5 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.07E-21 | 6 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.32E-10 | 7 | 52 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 56 | 79 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MEVRKGSWTK EEDHLLRNYI EKHGEGRWHK VPLQAGLNRC RKSCRMRWLN YLKPNIKRGD 60 FEEDEVDLMI RLRKLLGNRQ VGEAAGGRAS VGVEARPHRR RNSSSSTSPP MENGIDDWKT 120 LLHEDVLTNF WVEDTASMSS IGVNSTEKGF EMDLWQFLQE ETRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-11 | 2 | 94 | 24 | 117 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31407.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU155165 | 3e-51 | EU155165.1 Rubus idaeus R2R3 MYB transcription factor (MYB10) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024180245.1 | 7e-73 | transcription factor MYB114-like | ||||
TrEMBL | A0A346MMU9 | 3e-82 | A0A346MMU9_ROSRU; MYB113 protein | ||||
STRING | XP_004304847.1 | 3e-92 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-37 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | mrna31407.1-v1.0-hybrid |