PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31367.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 328aa    MW: 38036.3 Da    PI: 4.8387
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31367.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.84e-1471381128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk......kvkaeek.ewyfFskrdkkya..tgkrknr 76 
                              lp+ ++ +P  e+l+v+ L++k++g++++    ++ +d+y   ePw++ +      +vk +e+  +yf +++++k++  +gkr nr
  mrna31367.1-v1.0-hybrid   7 LPQSYKVRPDTEQLLVHNLRPKLDGEDFPQ-GLVPLCDLYGNkEPWQIWNdyfqelSVKDKERtGLYFITQHKTKTPraRGKRINR 91 
                              5778999********************999.88******96549****6445665544444443779999999998855699**** PP

                      NAM  77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +++sg+Wk     k vl++ +++++g ++ + + ++++++       mhe++l
  mrna31367.1-v1.0-hybrid  92 TVDSGTWKGEDPPKGVLAAsSRTVIGKRRRFRYENKEESE------QMHEFEL 138
                              ****************998566679999999998665555......5888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-176160IPR003441NAC domain
PROSITE profilePS5100519.2727160IPR003441NAC domain
PfamPF023654.0E-89138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAVDGDLPQS YKVRPDTEQL LVHNLRPKLD GEDFPQGLVP LCDLYGNKEP WQIWNDYFQE  60
LSVKDKERTG LYFITQHKTK TPRARGKRIN RTVDSGTWKG EDPPKGVLAA SSRTVIGKRR  120
RFRYENKEES EQMHEFELDA SVLRNKRKAK DYVLCILRKK SRSVKKNSED QDDQEEDDMS  180
CDASDDHEQD GDLPEPELFE EETSTTTQKL DEHTPKTAVE SEVYLQQQIA GQAMEKNDHE  240
GSQESDELRK CVMEIEVYIE KRIAGQAMKK IDHNDLKKSD ELRTWAMEFE VGLMKQNARD  300
QAKKKNDHKD SQTVSLEEME NYLMSDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31367.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298024.29e-91PREDICTED: NAC domain-containing protein 19-like
STRINGXP_004298024.11e-90(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.18e-11NAC domain containing protein 19