PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31322.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bZIP | ||||||||
Protein Properties | Length: 352aa MW: 39638.4 Da PI: 6.5294 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.7 | 3.8e-11 | 62 | 93 | 3 | 34 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 ++k++rr+++NReAAr+sR RKka++++Le+ mrna31322.1-v1.0-hybrid 62 ADKVQRRLEQNREAARKSRMRKKAYVQQLETS 93 79***************************984 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-6 | 60 | 149 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.783 | 62 | 104 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.8E-8 | 62 | 95 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-8 | 64 | 106 | No hit | No description |
SuperFamily | SSF57959 | 1.31E-7 | 64 | 97 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 67 | 82 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.7E-28 | 153 | 225 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MGIYEPFRQV GVWRETFSGG NSSNIGASTI VEVDSRIDNK IGFGSPEPMG PSGNDQESNR 60 SADKVQRRLE QNREAARKSR MRKKAYVQQL ETSRFKLAQL ELELDRTRKQ AAYGGSSFGG 120 SHMGYNGIVS SGITTFELEY GHWVEEQHRQ NIELRNALQE HATEIELRIL VEGGLNHYAT 180 LFRMKADAAK ADIFYLLSGI WRTSVERYFH WIGGFRPSEL LNILESQLEP LTEPQSLDFY 240 NLKQSSQQAE DALSQGMDKL QQTLAKTLEA DQILSGETYG SQMAAAIEKF EALESFVSQA 300 DHLRQQTLQQ MSRILTTHQA ARGLLALGEY FQRLRALSSL WTARPREPPA A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00247 | DAP | Transfer from AT1G77920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31322.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300665.1 | 0.0 | PREDICTED: transcription factor TGA7-like isoform X1 | ||||
Refseq | XP_011465538.1 | 0.0 | PREDICTED: transcription factor TGA7-like isoform X2 | ||||
Swissprot | Q93ZE2 | 1e-147 | TGA7_ARATH; Transcription factor TGA7 | ||||
TrEMBL | A0A2P6PHZ0 | 0.0 | A0A2P6PHZ0_ROSCH; Putative transcription factor bZIP family | ||||
STRING | XP_004300665.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1096 | 34 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77920.1 | 1e-150 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna31322.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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