PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31321.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bZIP | ||||||||
Protein Properties | Length: 472aa MW: 52672.4 Da PI: 8.4937 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.6 | 7.4e-15 | 400 | 443 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ +Le kv Le+ N+ Lkk+ mrna31321.1-v1.0-hybrid 400 RRQKRMIKNRESAARSRARKQAYTNQLESKVSHLEKMNTWLKKQ 443 69*************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.8E-10 | 396 | 455 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.346 | 398 | 443 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.3E-13 | 400 | 443 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.35E-21 | 400 | 445 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.6E-14 | 400 | 444 | No hit | No description |
SuperFamily | SSF57959 | 1.63E-10 | 400 | 445 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 403 | 418 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MDPTILEQCP STVTVRRNPH RRARPLTTPA TTAAGIPTPS CTVPKVPFPM EEILSMDIFN 60 SKPDPENFRN VWPQNPRNAA REQQKKKKSP SAEVCVKVNS ARSVMVSPPL ALQEPNRLKS 120 EVYNGFSHVG FGRVHMDDRT LVSGNGDEKP QFPPLAGQGS NYNLTLDRNE VESNLGNMSK 180 PLNTRMAHLD EFLKNVISVD QEVQLLQHAS SSCSSLPTSL FLGNFNLNGP LMSTTKKKIT 240 IDEVWKEIAH HDHHSLNLNS AAAHDSLHHQ RMTTIGEPTT ETTPPEHLLV RAGILNAHQM 300 MPIDPEAVVS QQADWFQFQV AAAAAAQQMT MLDSNFTVCE SVFENSSSAM NLDNFSENHQ 360 VGMSIPLPEI SAASSSESQA THAERKRNYS DEMKEKSIER RQKRMIKNRE SAARSRARKQ 420 AYTNQLESKV SHLEKMNTWL KKQKEVEILL SSNPTNSMPT YQLRRTSSAS F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31321.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301946.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
TrEMBL | A0A2P6PHY7 | 1e-167 | A0A2P6PHY7_ROSCH; Putative transcription factor bZIP family | ||||
STRING | XP_004301946.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1320 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 6e-27 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | mrna31321.1-v1.0-hybrid |