PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31211.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 926aa    MW: 102811 Da    PI: 6.7802
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31211.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.81.2e-1567162191
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkek.dgkwevtk 80 
                              kfY+ Y+  +GF++r+ + +k   +g+i +r +vCskeg++++ +kk     + k+r +r++ r +C a + vk ++  + ++v+ 
  mrna31211.1-v1.0-hybrid  67 KFYEIYSAALGFRIRRFRCEKD-LSGTIRRRGWVCSKEGEKRPARKKevraaSCKTRPPRSSMREKCMAAFGVKYSEeLAAYYVKY 151
                              6*****************9998.8888***************9999988887778888*****************99889****** PP

                     FAR1  81 leleHnHelap 91 
                              + ++H+Hel p
  mrna31211.1-v1.0-hybrid 152 FTTQHSHELLP 162
                              ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1267162IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.076399437IPR007527Zinc finger, SWIM-type
SMARTSM005750.0014412439IPR006564Zinc finger, PMZ-type
PfamPF044340.0011414429IPR007527Zinc finger, SWIM-type
PROSITE profilePS513759.153636670IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.7E-4643668IPR002885Pentatricopeptide repeat
PfamPF015355.7E-4643667IPR002885Pentatricopeptide repeat
PfamPF015357.4E-4669695IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.492671702IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.84703737IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.654738768IPR002885Pentatricopeptide repeat
PfamPF015350.056743767IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.435769803IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.7E-4771803IPR002885Pentatricopeptide repeat
PfamPF015354.5E-4771801IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.675839869IPR002885Pentatricopeptide repeat
PfamPF015350.57846867IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.813870904IPR002885Pentatricopeptide repeat
PfamPF015352.3E-4872898IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MSNNESFVDV ESGEEDYCNM EETEDFETTR ETYGADGPFE YNGKSFRELT LKDFDGTYFD  60
TVEDAEKFYE IYSAALGFRI RRFRCEKDLS GTIRRRGWVC SKEGEKRPAR KKEVRAASCK  120
TRPPRSSMRE KCMAAFGVKY SEELAAYYVK YFTTQHSHEL LPESNKAKSL ISHCVGKKLD  180
LAQAIAMPKA NDTIQTSAAN DNHPSGGNDC GGSTTELDLA HAVGLRKDRE SIQTSDAYAY  240
HPSGGNEFVD LTTVSDLEQG VARRKGSVNS AAASQHMVEP AGGLAFGSTN RSDLGQTNAV  300
GKYDRFCEYI PRMDKTLRKM RNIVCVDDFK CENSKPDIIT HMRSLEQQIA DIFTHDIYLL  360
IMHQIDWERK YIITKSEPYA GRDGKVFHLT QYDLPHRHWT VNYHHNISKV WFLCSCKLFQ  420
SDGIPCAHIF SVMKAELILK LPESLVLKRW TLDVGKPVNF HNLSDRNSQM VRYASLVSEI  480
KSVCFPASIT EEGTKKMKGE IAKLARDGTE SQTHSGLQNL IHRHQLHVGS DAHSFTGISV  540
GINAGHYTRS LPPEAQTLTD YVTLFSGMFN PSAEGTHQIQ SPQCIYKLFT QKAFHNAHSN  600
PQTPLSALIS AISSCPSVSY CRAIHACVIK SYSYSDGFIG DQLVSCYAKM GSAEDALNLF  660
DEMPKRDLVS WNSLISGFSP RGYVEKCLNA LFRMRFEVGI EPNEVTLISV VSACASRGAV  720
DEGMHIHGLA LKLGLLWEPK LVNSLINLYG KSGYLDAVCR LIETMPMQNV VSWNLMIAIH  780
AQNGSAAEGL NCFNLMRRAG VYPADGTVVS LLQVCENLEL GKLAEGVHGV IIKCGLSANV  840
RVATGVLDLY AKLGRLDYSL EVFKELINPD KVAWTAMLAG YATHGYGQEA VEIFENMHGG  900
AVICFPCQVE ANIQVLAAAQ GIDQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-455878972330PLS9-PPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31211.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P6PKQ71e-155A0A2P6PKQ7_ROSCH; Putative transcription factor FAR family
STRINGXP_004292394.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1167522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-10FAR1-related sequence 5