PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31175.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 535aa    MW: 60481.5 Da    PI: 6.5915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31175.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.3e-531342631129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                              +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+W
  mrna31175.1-v1.0-hybrid 134 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFW 218
                              69****************************.99**************963433332556*************************** PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              katg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  mrna31175.1-v1.0-hybrid 219 KATGRDKCIRN-TYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 263
                              **********9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001565.05E-7167No hitNo description
PROSITE profilePS5011015.427167IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-5162IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.57E-8166IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.3E-9166No hitNo description
SuperFamilySSF1019417.85E-60125286IPR003441NAC domain
PROSITE profilePS5100557.784134286IPR003441NAC domain
PfamPF023651.4E-27135262IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAEMDGCEAI RQIREVEKSY NLRISIIALT CHTPGEETTR MSDATMDDNL SKPLLMDRLL  60
ETMAVLAVAP SLYFLIMNSF TLDTVESLTP AAGGEGAVAE EKPRLTCELT DRSAWRYLKT  120
AIARLLMATS SGGVPPGFRF HPTDEELLHY YLKKKVSFQK FDMEVIREVD LNKMEPWELQ  180
ERCRIGSTPQ NEWYFFSHKD RKYPTGSRTN RATNAGFWKA TGRDKCIRNT YKKIGMRKTL  240
VFYRGRAPHG QKTDWIMHEY RLEDGDDPQG NLSSEDGWVI CRVFKKKNLF KVTGNNEGGS  300
SSMNSSDHHH HQQLTMNTNQ LQARTFMHAH SSRSDNQYLL RQQAFELNRP HDHDQDQDQL  360
PPSLHYAHLN LQPPPQYSLF HSQALNIPTT NSHKTLAAYN DYSALPSDSS PGHGMVKQLM  420
TNPRDCESTG SESLRYQACE PGLEVNDSAC EPNQQTMVNA GGRSSDDQGM SEWAMLDRLV  480
TSHLGNEDST SKGGASARYD QDGNGSSTVN QINQQQQQQQ LSLRGEMDFW GYAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-5113428815170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31175.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292409.10.0PREDICTED: protein BEARSKIN1
SwissprotQ9SV871e-147BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A2P6PKB90.0A0A2P6PKB9_ROSCH; Putative transcription factor NAM family
STRINGXP_004292409.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-139NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]