PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31150.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 345aa    MW: 38303.9 Da    PI: 8.219
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31150.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.72.3e-53181501128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkat
  mrna31150.1-v1.0-hybrid  18 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-AIIAEVDLYKFDPWQLPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKAT 102
                              79****************************.88***************988899******************************** PP

                      NAM  87 gkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+dk+vls+      ++++vg+kk Lvfy+g+ pkg kt+W+mheyr+
  mrna31150.1-v1.0-hybrid 103 GTDKPVLSTtdegggGTRKVGVKKALVFYRGKPPKGIKTNWIMHEYRI 150
                              ********98888877778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-6513186IPR003441NAC domain
PROSITE profilePS5100561.31318186IPR003441NAC domain
PfamPF023655.5E-2819150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MESTDSSSGS QPPPQPNLPP GFRFHPTDEE LVVHYLKKKA SSAPLPVAII AEVDLYKFDP  60
WQLPEKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLS TTDEGGGGTR  120
KVGVKKALVF YRGKPPKGIK TNWIMHEYRI ADNNTSNKPP PGCHDLGNKK NSLRLDDWVL  180
CRIYKKNNTH RPMDLEDSMD GTMGSSFPLS KLHHLPPKST TSTYGQFMDN DHNFYDGMVS  240
SEGINTSASF LPNSALANSS LPLKRELPNL YWNHDPEDEA GPSRRLHMDS SDQSTGNGSI  300
AILLSQLPQT PPPLHQQPML GTSQLGGDAL FRSTQYQLPG NWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-72101899168NO APICAL MERISTEM PROTEIN
1ut4_B4e-72101899168NO APICAL MERISTEM PROTEIN
1ut7_A4e-72101899168NO APICAL MERISTEM PROTEIN
1ut7_B4e-72101899168NO APICAL MERISTEM PROTEIN
3swm_A6e-721018912171NAC domain-containing protein 19
3swm_B6e-721018912171NAC domain-containing protein 19
3swm_C6e-721018912171NAC domain-containing protein 19
3swm_D6e-721018912171NAC domain-containing protein 19
3swp_A6e-721018912171NAC domain-containing protein 19
3swp_B6e-721018912171NAC domain-containing protein 19
3swp_C6e-721018912171NAC domain-containing protein 19
3swp_D6e-721018912171NAC domain-containing protein 19
3ulx_A5e-721718814170Stress-induced transcription factor NAC1
4dul_A4e-72101899168NAC domain-containing protein 19
4dul_B4e-72101899168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31150.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291668.10.0PREDICTED: NAC domain-containing protein 18-like
SwissprotQ9LD441e-115NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2P6QB230.0A0A2P6QB23_ROSCH; Putative transcription factor NAM family
STRINGXP_004291668.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-104NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]