PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31098.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 36116.9 Da PI: 7.1174 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.7e-18 | 21 | 67 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + W +eEd++l+++v+ +G g+W+t++++ g++R++k+c++rw +yl mrna31098.1-v1.0-hybrid 21 NLWKPEEDLILKKYVETHGEGNWATVSKRSGLNRSGKSCRLRWKNYL 67 56*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.6e-17 | 73 | 118 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l mrna31098.1-v1.0-hybrid 73 RGDMSEEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 118 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.039 | 15 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-16 | 19 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.28E-28 | 19 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-16 | 21 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 22 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-11 | 23 | 67 | No hit | No description |
PROSITE profile | PS51294 | 25.024 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-17 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 73 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.68E-12 | 76 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MENKRVKALQ QEQHSSWNKK NLWKPEEDLI LKKYVETHGE GNWATVSKRS GLNRSGKSCR 60 LRWKNYLRPN IKRGDMSEEE EDLIIRMHKL LGNRWSLIAG RLPGRTDNEV KNYWNTHLNK 120 NNTGCCPAPE SGGLSGRKRK TNNHDNYSDN THKHQDNCRC SNKTRKTIGG TESTKTESMT 180 REEELKDGIN SKEDDPSTST ITSTMTATSY PYWMGDYTSN TDQSLNFDYA DIDHQYSPSS 240 SWIQCCLPTI TGNIATSSST FAFDDEPFFA HMDSFLLLEA AFGCTTAAAA ATEGMQSSAT 300 MPFSSADDPH SPHYQLFHK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-22 | 20 | 120 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-22 | 20 | 120 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31098.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288785.1 | 0.0 | PREDICTED: trichome differentiation protein GL1-like | ||||
TrEMBL | A0A2P6RIS0 | 0.0 | A0A2P6RIS0_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004288785.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13545 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 3e-64 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | mrna31098.1-v1.0-hybrid |