PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31001.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 999aa    MW: 111636 Da    PI: 6.8076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31001.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.6e-06566587426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              ++C f++  G C+ Gd+C+F H+
  mrna31001.1-v1.0-hybrid 566 VPCYFYLN-GMCSKGDSCTFLHD 587
                              57998887.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF633801.97E-27203319IPR017938Riboflavin synthase-like beta-barrel
Gene3DG3DSA:2.40.30.103.5E-32203304No hitNo description
PROSITE profilePS5138413.399209317IPR017927Ferredoxin reductase-type FAD-binding domain
PfamPF009708.6E-23214316IPR008333Oxidoreductase, FAD-binding domain
CDDcd061833.24E-104214457No hitNo description
PRINTSPR004065.7E-22266273IPR001834NADH:cytochrome b5 reductase (CBR)
PRINTSPR004065.7E-22302316IPR001834NADH:cytochrome b5 reductase (CBR)
SuperFamilySSF523432.88E-36303431No hitNo description
Gene3DG3DSA:3.40.50.803.3E-49305457No hitNo description
PRINTSPR004065.7E-22325344IPR001834NADH:cytochrome b5 reductase (CBR)
PfamPF001755.4E-30326432IPR001433Oxidoreductase FAD/NAD(P)-binding
PRINTSPR004065.7E-22363374IPR001834NADH:cytochrome b5 reductase (CBR)
PRINTSPR004065.7E-22418426IPR001834NADH:cytochrome b5 reductase (CBR)
PROSITE profilePS501039.329482511IPR000571Zinc finger, CCCH-type
PfamPF156631.4E-9483536No hitNo description
SMARTSM003560.72483510IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.592513539IPR000571Zinc finger, CCCH-type
SMARTSM003560.96515538IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.863562589IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6562587IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5563588IPR000571Zinc finger, CCCH-type
PfamPF146080.26567586No hitNo description
Gene3DG3DSA:4.10.1000.102.2E-4567589IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0055114Biological Processoxidation-reduction process
GO:0005739Cellular Componentmitochondrion
GO:0005794Cellular ComponentGolgi apparatus
GO:0009505Cellular Componentplant-type cell wall
GO:0005507Molecular Functioncopper ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MAYFTDLSTW PKTLWINNQA SRVTDVPYTH QQASLPRDGC AILHVILTKH VYMFVSVLYA  60
QYKAGPGPYS TLWPAQSKIH VSDLDTTIPP HRIKDLHASS VGKQFTAAYT PDHFLQSSSS  120
SAPRVLLLPG EKMAAFFQRL AKATPTAFTA AFNSGSGHSR SAFRFPIGAL AAVSGGISYV  180
YYHSSVSDPV YLDEIKEEQT GPKVALNPNK WTEFKLQDSA RVSHNTQLFR FTFDPTAKLG  240
LDVASCLITR APIGQDAEGK PKFVTRPYTP ISDPESKGYF DLLIKVYPEG KMSQHFASLK  300
PGDVLEVKGP IEKLRYIPNM KKHIGMIAGG SGITPMLQVI EAILKNPDDT TKVSLLYANV  360
SPDDILLKQK LDLLAAAHPN LKVYYTVDNP TKSWKGGKGF ISKDMAVKGL PGPSEDTLIL  420
VCGPPGMMEH ISGGKAKDWS QGELSGILKE LGYTEEMALT RSLCYLSIVA NSGFAMDDED  480
LLKRNTDCVH FMATPPACDK GLECEFRHSK IARLNPKVCW YWLAGDCLNL SCAFRHPLCL  540
KPLEEEHEAA LSESAPSSIS ANKSNVPCYF YLNGMCSKGD SCTFLHDIEG SVSTGKCSNT  600
ASTCTEALPS ENKASVVNET ASAPTVGLHP KQLIQDTKFH PKQDLDDWEQ PQKSVSHVSE  660
YGDEEVDEIR SNPLLLPAEG SIHSKSPVFT DQSSEERADD LIVQDEWWES SPDFDVIVDN  720
LGGEVSPEYF PTLDGEHWEL NKEWHDYDNP DEYDPMCPGA ELLYENQIYD SYDCLDTRYL  780
FGNERSIHGY AENIMLDSIL SRKRKLMPME DDQEGLDLRN HLRRRRVIDD CSVSGLSRMH  840
ESLQLIGRRQ EWPQRHDTGR PGRLASEVVN RTHDTRKENE VFNSAGIQRR PRKHSQQYRS  900
RKLRERRLAQ PQFPSSEFTR NPVPREKRSS KEDLTVFTGP KSLAQIKEEK KKAGDNGGGI  960
RKSRCVQRTR DDFQGPKPFT EILKEKRKIA DRSGSGSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2eix_A3e-662054565238NADH-cytochrome b5 reductase
2eix_B3e-662054565238NADH-cytochrome b5 reductase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31001.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458266.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
TrEMBLA0A498HUL90.0A0A498HUL9_MALDO; Uncharacterized protein
STRINGXP_004288814.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1116122