PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31001.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 999aa MW: 111636 Da PI: 6.8076 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19 | 2.6e-06 | 566 | 587 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f++ G C+ Gd+C+F H+ mrna31001.1-v1.0-hybrid 566 VPCYFYLN-GMCSKGDSCTFLHD 587 57998887.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF63380 | 1.97E-27 | 203 | 319 | IPR017938 | Riboflavin synthase-like beta-barrel |
Gene3D | G3DSA:2.40.30.10 | 3.5E-32 | 203 | 304 | No hit | No description |
PROSITE profile | PS51384 | 13.399 | 209 | 317 | IPR017927 | Ferredoxin reductase-type FAD-binding domain |
Pfam | PF00970 | 8.6E-23 | 214 | 316 | IPR008333 | Oxidoreductase, FAD-binding domain |
CDD | cd06183 | 3.24E-104 | 214 | 457 | No hit | No description |
PRINTS | PR00406 | 5.7E-22 | 266 | 273 | IPR001834 | NADH:cytochrome b5 reductase (CBR) |
PRINTS | PR00406 | 5.7E-22 | 302 | 316 | IPR001834 | NADH:cytochrome b5 reductase (CBR) |
SuperFamily | SSF52343 | 2.88E-36 | 303 | 431 | No hit | No description |
Gene3D | G3DSA:3.40.50.80 | 3.3E-49 | 305 | 457 | No hit | No description |
PRINTS | PR00406 | 5.7E-22 | 325 | 344 | IPR001834 | NADH:cytochrome b5 reductase (CBR) |
Pfam | PF00175 | 5.4E-30 | 326 | 432 | IPR001433 | Oxidoreductase FAD/NAD(P)-binding |
PRINTS | PR00406 | 5.7E-22 | 363 | 374 | IPR001834 | NADH:cytochrome b5 reductase (CBR) |
PRINTS | PR00406 | 5.7E-22 | 418 | 426 | IPR001834 | NADH:cytochrome b5 reductase (CBR) |
PROSITE profile | PS50103 | 9.329 | 482 | 511 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.4E-9 | 483 | 536 | No hit | No description |
SMART | SM00356 | 0.72 | 483 | 510 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.592 | 513 | 539 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.96 | 515 | 538 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.863 | 562 | 589 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 562 | 587 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-5 | 563 | 588 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.26 | 567 | 586 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 567 | 589 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0005794 | Cellular Component | Golgi apparatus | ||||
GO:0009505 | Cellular Component | plant-type cell wall | ||||
GO:0005507 | Molecular Function | copper ion binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 999 aa Download sequence Send to blast |
MAYFTDLSTW PKTLWINNQA SRVTDVPYTH QQASLPRDGC AILHVILTKH VYMFVSVLYA 60 QYKAGPGPYS TLWPAQSKIH VSDLDTTIPP HRIKDLHASS VGKQFTAAYT PDHFLQSSSS 120 SAPRVLLLPG EKMAAFFQRL AKATPTAFTA AFNSGSGHSR SAFRFPIGAL AAVSGGISYV 180 YYHSSVSDPV YLDEIKEEQT GPKVALNPNK WTEFKLQDSA RVSHNTQLFR FTFDPTAKLG 240 LDVASCLITR APIGQDAEGK PKFVTRPYTP ISDPESKGYF DLLIKVYPEG KMSQHFASLK 300 PGDVLEVKGP IEKLRYIPNM KKHIGMIAGG SGITPMLQVI EAILKNPDDT TKVSLLYANV 360 SPDDILLKQK LDLLAAAHPN LKVYYTVDNP TKSWKGGKGF ISKDMAVKGL PGPSEDTLIL 420 VCGPPGMMEH ISGGKAKDWS QGELSGILKE LGYTEEMALT RSLCYLSIVA NSGFAMDDED 480 LLKRNTDCVH FMATPPACDK GLECEFRHSK IARLNPKVCW YWLAGDCLNL SCAFRHPLCL 540 KPLEEEHEAA LSESAPSSIS ANKSNVPCYF YLNGMCSKGD SCTFLHDIEG SVSTGKCSNT 600 ASTCTEALPS ENKASVVNET ASAPTVGLHP KQLIQDTKFH PKQDLDDWEQ PQKSVSHVSE 660 YGDEEVDEIR SNPLLLPAEG SIHSKSPVFT DQSSEERADD LIVQDEWWES SPDFDVIVDN 720 LGGEVSPEYF PTLDGEHWEL NKEWHDYDNP DEYDPMCPGA ELLYENQIYD SYDCLDTRYL 780 FGNERSIHGY AENIMLDSIL SRKRKLMPME DDQEGLDLRN HLRRRRVIDD CSVSGLSRMH 840 ESLQLIGRRQ EWPQRHDTGR PGRLASEVVN RTHDTRKENE VFNSAGIQRR PRKHSQQYRS 900 RKLRERRLAQ PQFPSSEFTR NPVPREKRSS KEDLTVFTGP KSLAQIKEEK KKAGDNGGGI 960 RKSRCVQRTR DDFQGPKPFT EILKEKRKIA DRSGSGSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2eix_A | 3e-66 | 205 | 456 | 5 | 238 | NADH-cytochrome b5 reductase |
2eix_B | 3e-66 | 205 | 456 | 5 | 238 | NADH-cytochrome b5 reductase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31001.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011458266.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1 | ||||
TrEMBL | A0A498HUL9 | 0.0 | A0A498HUL9_MALDO; Uncharacterized protein | ||||
STRING | XP_004288814.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11161 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | mrna31001.1-v1.0-hybrid |