PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30998.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 327aa    MW: 36751.3 Da    PI: 7.3736
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30998.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.8e-1078102126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ykt+lC +f   G C+ G++C++aHg
  mrna30998.1-v1.0-hybrid  78 YKTRLCANFKN-GSCRNGENCNYAHG 102
                              9**********.*************8 PP
2zf-CCCH246.7e-08140162325
                              S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                              ++lC+ f  + +C+yGdrC+F H
  mrna30998.1-v1.0-hybrid 140 MKLCKKFNNGEECPYGDRCNFRH 162
                              689******66**********88 PP
3zf-CCCH42.79e-14218244127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +kt++C+ + +tG C++G++C+FaHg+
  mrna30998.1-v1.0-hybrid 218 WKTKICNKWEQTGKCPFGEKCHFAHGQ 244
                              8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-1474110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-875108IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-677103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.36177104IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-778102IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4137164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896137165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-9140164IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5140162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-18213249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-11215248IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-7217244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07217245IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-11218244IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MPVQSLYVGG SDAVNCWPPI AMNNEDQHSQ FEQQGPPFKR PRNSEEPQSN PMPYPPMNNA  60
RLPPSNAPVN RGANNIFYKT RLCANFKNGS CRNGENCNYA HGIDDIRQPP PNWQELVTVR  120
DEDRPLTGNW EDDQKIIHRM KLCKKFNNGE ECPYGDRCNF RHEEPAKFRE DSSRYRENAA  180
ISIGTTGAPM PHASSTSLEE NRPNTGINTF LVTPKPYWKT KICNKWEQTG KCPFGEKCHF  240
AHGQEELQAP GMRVEAELMA SAPISTKPQA VPINDSSTLA MAAMPAAVNE EVQGKKCGFK  300
WRGSMKIKQI NRIYGDWLDD VPLVES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30998.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287352.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT813e-89C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A2P6RJ480.0A0A2P6RJ48_ROSCH; Putative transcription factor C3H family
STRINGXP_004287352.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-91C3H family protein