PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30927.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CPP
Protein Properties Length: 743aa    MW: 79965 Da    PI: 7.969
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30927.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.62.6e-13206245242
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                              ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  mrna30927.1-v1.0-hybrid 206 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCCNNVEN 245
                              89**************************.********9875 PP
2TCR50.73.7e-16290329140
                      TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                              k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  mrna30927.1-v1.0-hybrid 290 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 329
                              589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-15205245IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.314206330IPR005172CRC domain
PfamPF036385.6E-10207242IPR005172CRC domain
SMARTSM011143.5E-20290331IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.1E-13293328IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MSSNLGEKFS PSFCNYTKKY SNPTVNPYHT HTPYEYPPSI PTLPSTVRSP PTPHPPSNIP  60
KIEIQKPGRE REEEDEEEEE EEEEEATQLK KRRLRSLFSL ESSQSLSLFS NPHISNPRFF  120
SNSPTTLFFS QFGAVSIAAT AGRAPPRVSS CAAAQFGKVN NVEILVEGLI LEGEVFMLLD  180
VFKLKPDSPK ARPRPVVDGK DGTPKKQKQC NCKHSRCLKL YCECFASGIY CDGCNCVNCC  240
NNVENEGARR DAVEATLERN PNAFRPKIAS SPHGPRDSRE EAGELVVLAK HNKGCHCKKS  300
GCLKKYCECF QANILCSENC KCIDCKNFEG SEERQALFHG DHANNMAYIQ HAANAAITGA  360
IGSSGYLSSP MVSKKRKGQE LFFGQTVKDP SAHRIGQYPQ ANHLRPPAPS SSSVPVARHG  420
TAGLGPSRFT YRSLLADIIQ PQDLKELCSV LVVVAEEAAK TLAEQRNAAE KQAEASLVTT  480
TEDRLQSQKE SDTQKAVTDD CSTANQADKI SSEDSNSDGV DGPKGRPMSP GTLALMCDEQ  540
DTMFMSAASP NGLMGDGCNT SSQLPNGHGM TEVYAEQERI VLAKFRGCLN MLITRGELKG  600
KSTLFLTSGS RSYKNFDQAE CASLARSEAA AQREQIGNGT TNPRMETGSR QGPISNGVAK  660
TAVPPTARTS QMVSAAVPPT ARTPQTVSAA VPPTARTLQM VTAAVPPTAR ASQMVTAAVS  720
APTTVSPKPP SVPGNGGNKP KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3120733911132Protein lin-54 homolog
5fd3_B2e-3120733911132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30927.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470497.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2P6RJE40.0A0A2P6RJE4_ROSCH; Putative transcription factor Tesmin family
STRINGXP_004288832.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-174Tesmin/TSO1-like CXC domain-containing protein