PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30881.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 363aa    MW: 40493.1 Da    PI: 5.9576
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30881.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.6e-35381292102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              F++k+y++++d+++++lisw + +nsf+v+++ ef++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F 
  mrna30881.1-v1.0-hybrid  38 FVMKTYQMVNDPTTDRLISWGRANNSFIVVEPLEFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANECFL 114
                              9********************999*****************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+++ll+++ r+k+
  mrna30881.1-v1.0-hybrid 115 RGQTHLLKNVVRRKH 129
                              ***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.0E-5434127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-3435127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3736127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-183861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3038127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MMITNTSQNQ RASSSSEAKP QQSLMMSMED SGNVIAPFVM KTYQMVNDPT TDRLISWGRA  60
NNSFIVVEPL EFSQRLLPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN ECFLRGQTHL  120
LKNVVRRKHT GNHGNNNHRM VNTTAFGKAE ELDDEEIVME IARLRQEQKS LEDEMESMNK  180
RLEATERRPQ QMMAFLHRVA EDPEILPRMM LEKDRRITEG DKKRRLMIAS TSSTSSSGMG  240
ATTTSVKTEE EVDGAMGVLS SPEPGFEVQS FCRGSTSPET STAQAWWSQG RVVGRTRGDQ  300
ELYGSSTALG TQSGHGNGNS SNFGLGFGYS GNRSGSGEVG YFAEVEESPP PPYPFSLLEG  360
GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-253512726129Heat shock factor protein 1
5d5v_B3e-253512726129Heat shock factor protein 1
5d5v_D3e-253512726129Heat shock factor protein 1
5hdg_A2e-25351277110Heat shock factor protein 1
5hdn_A2e-25351277110Heat shock factor protein 1
5hdn_B2e-25351277110Heat shock factor protein 1
5hdn_C2e-25351277110Heat shock factor protein 1
5hdn_D2e-25351277110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30881.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287427.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV521e-87HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1B0V8F00.0A0A1B0V8F0_FRAVE; Heat shock factor C1a
STRINGXP_004287427.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-88heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]