PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30746.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 474aa    MW: 52719.6 Da    PI: 8.8092
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30746.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.91.2e-331112186112
                      NAM   6 rFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                               FhP+deel+ +yL++kv +++++    i++v d++k+ePw+Lp+k+k +ekew  Fs rd+ky+tg r+nratk+gyWk tgkd+
  mrna30746.1-v1.0-hybrid 111 GFHPSDEELIRYYLHNKVINSNFTS-GPISQVvDLNKCEPWQLPEKAKMGEKEWDMFSLRDQKYPTGLRANRATKAGYWKDTGKDR 195
                              6*********************999.6677666***********99999************************************* PP

                      NAM  91 evlsk.kgelvglkktLvfykgr 112
                              e++s+ + +l+g+kktLvf +++
  mrna30746.1-v1.0-hybrid 196 EIYSSkSCSLIGMKKTLVFTTAE 218
                              ***9845567*********9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.504106266IPR003441NAC domain
PfamPF023651.2E-13110216IPR003441NAC domain
SuperFamilySSF1019417.72E-34110218IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MARLRMRYMS IRCSRNVPCL CQHSPAQTDS RIHSRTRTSI GRFSSIDSSS PRKNGRANSR  60
STRTSCVASG TPSPRLPFSV FRCSSSMLDA SSLISIGVLG VSEYRCKCNI GFHPSDEELI  120
RYYLHNKVIN SNFTSGPISQ VVDLNKCEPW QLPEKAKMGE KEWDMFSLRD QKYPTGLRAN  180
RATKAGYWKD TGKDREIYSS KSCSLIGMKK TLVFTTAELP RVSGVTGSCT STALKIYLLP  240
RYGASLLPQS NAHEWNQWIL SRVFQKAMKI NEPECKETRM IGSGGYSAEP SSSSSSSISL  300
PPLFDSSPYY PTNASLTDRD SCSHDNRTPM EHVSCFSTNT GTSDDLMTSL DLTPLPQHQT  360
SSLHVHGFGG LSDFPSSLGY LEENLQLPFL FSQGMQPHQP YYSSTTGSFE FDLGDWSSLG  420
NWCAATDRRA RSRPWLPQRL ITCGRTKGGW SELSIVKAET AICGGLWYHY ICM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-2511226623165NO APICAL MERISTEM PROTEIN
1ut4_B5e-2511226623165NO APICAL MERISTEM PROTEIN
1ut7_A5e-2511226623165NO APICAL MERISTEM PROTEIN
1ut7_B5e-2511226623165NO APICAL MERISTEM PROTEIN
4dul_A5e-2511226623165NAC domain-containing protein 19
4dul_B5e-2511226623165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30746.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461978.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
TrEMBLA0A2P6QAJ91e-125A0A2P6QAJ9_ROSCH; Putative transcription factor NAM family
STRINGXP_004295380.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36893463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.11e-51NAC family protein