PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30741.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 24802.1 Da    PI: 4.8805
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30741.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.79.9e-26856250
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             +ie+   rqvtfskRr+g++KKA ELSvLCda+vavi+fsst+klye s
  mrna30741.1-v1.0-hybrid  8 KIESLPARQVTFSKRRKGLFKKAGELSVLCDAKVAVIVFSSTDKLYELS 56
                             7999999***************************************965 PP
2K-box47.11e-16861602397
                    K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                              +L+ e+ +  re+Rh+ G+dLe+L++ eLq+Le+ +e +l+++ ++K++ +++qi+ l  k  el een+ L ++
  mrna30741.1-v1.0-hybrid  86 RLNVELAEKIRELRHMEGKDLEELDIDELQRLEKMIEGGLSRVLETKDQRIRSQIRALETKGAELAEENNLLIRQ 160
                              4444444334678*********************************************************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-29158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.679159IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-21121IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-27273IPR002100Transcription factor, MADS-box
CDDcd002654.58E-32374No hitNo description
PfamPF003191.5E-23854IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-212136IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-213657IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.8977168IPR002487Transcription factor, K-box
PfamPF014861.2E-1282160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNKIKIEKIE SLPARQVTFS KRRKGLFKKA GELSVLCDAK VAVIVFSSTD KLYELSRSST  60
KDIIARYKQC TKDDGVEESA DECMMRLNVE LAEKIRELRH MEGKDLEELD IDELQRLEKM  120
IEGGLSRVLE TKDQRIRSQI RALETKGAEL AEENNLLIRQ SLRTLLSMES SGISTDDDEQ  180
GMASESCTIS TSCFTTGSST SSTDDSSSSE NTMSLKLGLP RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-14367569MEF2C
5f28_B5e-14367569MEF2C
5f28_C5e-14367569MEF2C
5f28_D5e-14367569MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30741.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460326.11e-157PREDICTED: MADS-box protein AGL24-like
TrEMBLA0A2P6PH101e-85A0A2P6PH10_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004299729.12e-86(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3459622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.18e-46AGAMOUS-like 24