PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna30736.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29444.7 Da PI: 5.2161 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.7 | 1.3e-13 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +lv +++++G +W+ ++ g+ R++k+c++rw +yl mrna30736.1-v1.0-hybrid 16 KGPWSPDEDHKLVAYIQRYGIWNWSQMPKPAGLARSGKSCRLRWVNYL 63 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+e ++++ ++ G++ W+ Ia+++ gRt++++k++w+++l mrna30736.1-v1.0-hybrid 69 RGNFSREEEETIIKLQQKIGNR-WSVIAAKLS-GRTDNEIKNYWHTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-23 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.934 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-28 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-8 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-12 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-6 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.565 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.83E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MVRGSTQQCD EKRLKKGPWS PDEDHKLVAY IQRYGIWNWS QMPKPAGLAR SGKSCRLRWV 60 NYLRPDIKRG NFSREEEETI IKLQQKIGNR WSVIAAKLSG RTDNEIKNYW HTHLKKRLNN 120 DKSNRVENTS SETETFLVDE EASKASLLET SRENLSPSSS GIADEIDHKP QITEQQSICD 180 TFGELQSLWT HSQVTSTAVE DSEAMFVDSA GLTLSTAADQ VWLQQEPIFP CGSYSDDAHV 240 LMSDYWVNLG VQSDETNGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna30736.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293617.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SA47 | 4e-55 | MYB58_ARATH; Transcription factor MYB58 | ||||
TrEMBL | A0A2P6Q3D4 | 1e-165 | A0A2P6Q3D4_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004293617.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 2e-57 | myb domain protein 58 |
Link Out ? help Back to Top | |
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Phytozome | mrna30736.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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