PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30683.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LFY
Protein Properties Length: 388aa    MW: 43407.5 Da    PI: 6.3011
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30683.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY517.46.3e-1581937039386
                  FLO_LFY  39 aaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeee 124
                               ++aaa ++l  lee+f++yGvry  +a iaelGftvstL++mkdeeldd+m+s+s+  +++llvGeryGikaavra+rr+  eee
  mrna30683.1-v1.0-hybrid  19 PQQAAAGYSLLPLEEMFRTYGVRYHVAATIAELGFTVSTLLEMKDEELDDMMNSVSQFSQVELLVGERYGIKAAVRAQRRQRLEEE 104
                              456677788889******************************************************************98666655 PP

                  FLO_LFY 125 aekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededee 210
                              +  +    ls d++++   l q+glseepvq+eke++gsgge ++  e v+a++k +++e ++ ++    +++++e +  +d+d+e
  mrna30683.1-v1.0-hybrid 105 E--EEDWPLSGDTNAMDADLPQQGLSEEPVQQEKEMVGSGGEAAC--EGVTAAKK-RKRELRRIRR-GGGHRSSNEGV--DDDDDE 182
                              3..34445899988877789*******************999944..33333311.1122222211.12222222222..222222 PP

                  FLO_LFY 211 eeededeeg............sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnq 284
                               ee+ed+ +            ++ +g++rqrehPfivtepgevargkknGLDYLf+LyeqC ++L+qvq+ akerGekcPtkvtn+
  mrna30683.1-v1.0-hybrid 183 IEENEDGINggggeqpsralaKRGGGRKRQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCYQYLTQVQNTAKERGEKCPTKVTNE 268
                              222223222357888888887777788*********************************************************** PP

                  FLO_LFY 285 vfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYv 370
                              vfryakk ga+yinkPk+rhYvhCYalhcL+++ snalrr++k rg n+Gawrqacy+p+v+iaa +g dida+f+ahp+Ls+WYv
  mrna30683.1-v1.0-hybrid 269 VFRYAKKEGANYINKPKLRHYVHCYALHCLNKDRSNALRREYKLRGQNIGAWRQACYTPVVEIAAAHGLDIDAIFSAHPQLSVWYV 354
                              ************************************************************************************** PP

                  FLO_LFY 371 PtkLrqLChlerskas 386
                              PtkLrqLCh+er +a+
  mrna30683.1-v1.0-hybrid 355 PTKLRQLCHAERINAA 370
                              ************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.1E-15121369IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDPYSITASL FQWDFSFAPQ QAAAGYSLLP LEEMFRTYGV RYHVAATIAE LGFTVSTLLE  60
MKDEELDDMM NSVSQFSQVE LLVGERYGIK AAVRAQRRQR LEEEEEEDWP LSGDTNAMDA  120
DLPQQGLSEE PVQQEKEMVG SGGEAACEGV TAAKKRKREL RRIRRGGGHR SSNEGVDDDD  180
DEIEENEDGI NGGGGEQPSR ALAKRGGGRK RQREHPFIVT EPGEVARGKK NGLDYLFHLY  240
EQCYQYLTQV QNTAKERGEK CPTKVTNEVF RYAKKEGANY INKPKLRHYV HCYALHCLNK  300
DRSNALRREY KLRGQNIGAW RQACYTPVVE IAAAHGLDID AIFSAHPQLS VWYVPTKLRQ  360
LCHAERINAA ASSTASGGSG TAHQLPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A6e-952083802183PROTEIN LEAFY
2vy2_A6e-952083802183PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30683.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460285.10.0PREDICTED: protein UNIFOLIATA-like
SwissprotO040641e-149FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A184XYZ30.0A0A184XYZ3_FRAAN; LEAFY-like protein 1
STRINGXP_004300371.11e-178(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.18e-94floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]