PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30665.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 485aa MW: 51788 Da PI: 5.5634

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30665.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.4e-05	374	411	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L mrna30665.1-v1.0-hybrid 374 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 411 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	362	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.16E-5	372	415	No hit	No description
SuperFamily	SSF47459	2.22E-11	372	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-8	376	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MAEEYQGGIC GGNWWSTASR HALVAAASPC SVGFNDHMGS FGCPNDMDMI KSSRSTCGGE 60 INIKSSDVVS VRTDHDQDHD VRNLHENSDI SATTDRSTLQ MIGFGLSSLS STVPSDLNQA 120 LLLRSGSGRG ESNFHNSMLP EAMGSFKQPM NNQDFSLDQS SSSSGFPITS SSANNSYGSG 180 GFPSQLLQNL YDPEEVVVPQ PQLQSLFNNG SSSMSYSSAE NYGTLGSNAL LSSPASTTTC 240 WPRYSPSCLR PSLQPTQQQQ PVGGSGGGGG LQFSNINTPF WNTPAAALNH DIRSTGLFPS 300 LSQSQYTAPT AAAYDEHKPI TSGNFTKANT NEDVQDSSSS TVKKSGSSFC SSTEPVFKRA 360 RIETPSPLPT FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVGVLST 420 PYMNNGAPIQ HQQGCDKLKE GEQGGKQDLQ SRGLCLVPVS STFPVANETT ADFWTPTFGA 480 TTFR*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MAEEYQGGIC GGNWWSTASR HALVAAASPC SVGFNDHMGS FGCPNDMDMI KSSRSTCGGE  60
INIKSSDVVS VRTDHDQDHD VRNLHENSDI SATTDRSTLQ MIGFGLSSLS STVPSDLNQA  120
LLLRSGSGRG ESNFHNSMLP EAMGSFKQPM NNQDFSLDQS SSSSGFPITS SSANNSYGSG  180
GFPSQLLQNL YDPEEVVVPQ PQLQSLFNNG SSSMSYSSAE NYGTLGSNAL LSSPASTTTC  240
WPRYSPSCLR PSLQPTQQQQ PVGGSGGGGG LQFSNINTPF WNTPAAALNH DIRSTGLFPS  300
LSQSQYTAPT AAAYDEHKPI TSGNFTKANT NEDVQDSSSS TVKKSGSSFC SSTEPVFKRA  360
RIETPSPLPT FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVGVLST  420
PYMNNGAPIQ HQQGCDKLKE GEQGGKQDLQ SRGLCLVPVS STFPVANETT ADFWTPTFGA  480
TTFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30665.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460359.1	0.0	PREDICTED: transcription factor bHLH112 isoform X1
TrEMBL	A0A2P6Q371	0.0	A0A2P6Q371_ROSCH; Putative transcription factor bHLH family
STRING	XP_004293560.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	7e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	mrna30665.1-v1.0-hybrid