PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna30567.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20545.6 Da PI: 10.1686 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.2 | 7.8e-22 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r+ ++ rqvtfskRr+g++KKA+E+ +LC+aeva+++fs+ gk mrna30567.1-v1.0-hybrid 10 RVMDNNSRQVTFSKRRTGLFKKAHEIATLCGAEVAIVVFSPGGK 53 6778889**********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.76E-29 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.109 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.2E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.25E-35 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 1.4E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGRRKIEMKR VMDNNSRQVT FSKRRTGLFK KAHEIATLCG AEVAIVVFSP GGKPFSFGHP 60 NVDSVADRFL NREEDEDNTD DRGVRRSGKV VERLNQQVDD LVKKLKAEKK KGEVLDRALL 120 KAKTKWEVLI QEMSELVEAK QSLEDLRESV MARVSDMEAS SSLLLLANKP MKETEKNVAK 180 SG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-19 | 1 | 97 | 1 | 91 | MEF2C |
5f28_B | 2e-19 | 1 | 97 | 1 | 91 | MEF2C |
5f28_C | 2e-19 | 1 | 97 | 1 | 91 | MEF2C |
5f28_D | 2e-19 | 1 | 97 | 1 | 91 | MEF2C |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna30567.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460177.1 | 1e-129 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2P6Q5E6 | 1e-101 | A0A2P6Q5E6_ROSCH; Putative transcription factor MADS-type1 family | ||||
STRING | XP_004294548.1 | 1e-106 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 7e-38 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | mrna30567.1-v1.0-hybrid |