PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30464.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WOX
Protein Properties Length: 295aa    MW: 32410.3 Da    PI: 6.1561
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30464.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.86.9e-172686357
                             --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             +R+t+t++ql +L++l+++   r ps e+++ +  +l    +++ ++V++WFqN++a+e++
  mrna30464.1-v1.0-hybrid 26 TRWTPTNDQLIILNDLYYNkgVRSPSNEQIQMIRFQLrqygKIEGKNVFYWFQNHKARERQ 86
                             7****************97689*************************************97 PP
2Wus_type_Homeobox102.52.9e-332587364
        Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                              tRWtPt++Q+ iL++ly+ +G+r+P++e+iq i+ +L++yGkie+kNVfyWFQN+kaRerq+
  mrna30464.1-v1.0-hybrid 25 ITRWTPTNDQLIILNDLYYnKGVRSPSNEQIQMIRFQLRQYGKIEGKNVFYWFQNHKARERQQ 87
                             69***************9779****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-5787IPR009057Homeodomain-like
PROSITE profilePS500719.2972187IPR001356Homeobox domain
SuperFamilySSF466894.71E-102190IPR009057Homeodomain-like
SMARTSM003890.00172391IPR001356Homeobox domain
CDDcd000860.002592688No hitNo description
PfamPF000461.9E-142686IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEPQTQQLTE DGGNNNEAGS SRQSITRWTP TNDQLIILND LYYNKGVRSP SNEQIQMIRF  60
QLRQYGKIEG KNVFYWFQNH KARERQQMKK FTSDGHVPMQ SSGLVGNGNG TNWKPEDQYM  120
NMNNKYSNIS NIGQGVSSAP ASAYSAGMIA INGQMGNYGG YGSMDMQKSF RDFSISAGGG  180
TGATAVGVGG SISHNFWSGV GGSVHPYSSS SYTTFFNMKE QTFMEQEEDH HQEIETLPLF  240
PMHGEGFFGN TKTSSEGGSG YGYYSGGWDG YNGGARTSLD LSLNSYGYNT PNYY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30464.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289091.11e-129PREDICTED: protein WUSCHEL
TrEMBLA0A384QV521e-122A0A384QV52_ROSCN; Homeodomain protein WUS
STRINGXP_004289091.11e-128(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-31WOX family protein