PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna30401.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 268aa MW: 28801.4 Da PI: 6.789 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.8 | 1.4e-41 | 19 | 117 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh+++Gasnv k+l++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq + mrna30401.1-v1.0-hybrid 19 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVYGASNVAKILNELNAAHREDAVTSLAYEAEFRLRDPVYGCVGLISVLQDR 104 7************************************************************************************* PP DUF260 87 leqlkaelallke 99 l++l+++l +k+ mrna30401.1-v1.0-hybrid 105 LKKLQTDLYNAKK 117 *******988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.473 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-41 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MLNAVEGEAP KMSSNTHSPC AACKFLRRKC TQECVFAPYF PPDQPQKFAN VHRVYGASNV 60 AKILNELNAA HREDAVTSLA YEAEFRLRDP VYGCVGLISV LQDRLKKLQT DLYNAKKDLS 120 TYIGPQALMI PVFHPSPQPE MNGGGAMAVP MLGVPTGPQH GGHAGGQLVI RDQQQQMFEA 180 QQQELVRFNV NGIENGNGFN QMAGGGGGGG GSNGVSLGLG GFDNNAFNNQ MQAAAAAHHH 240 HHQHSVDYQL QAQLMLQPQP KSEGEES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-47 | 18 | 122 | 10 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-47 | 18 | 122 | 10 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna30401.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460237.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_011460238.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_011460239.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_011460240.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_011460241.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 3e-71 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2P6Q5T3 | 1e-128 | A0A2P6Q5T3_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_008371805.1 | 1e-128 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-66 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna30401.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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