PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30370.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 461aa    MW: 49952.5 Da    PI: 7.9322
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30370.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.25.2e-37702282137
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                               g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL++ a  ai el++++++s  ++ +  + s ++  ss
  mrna30370.1-v1.0-hybrid  70 SGGKDRHSKVWTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKSAADAIAELPSLNTDSFPDTpK--QLSDEKRGSS 153
                              689*************************************************************6666644432..2222222122 PP

                      TCP  87 sg......................kaaksaa.kskksqksaasalnlakesr.akarararertrekmriknkln 137
                              ++                      + + s+  +s+ s++s+ s l+l++  r + ar+rarert++++ +++++n
  mrna30370.1-v1.0-hybrid 154 EHgldsvevdvddhpnyhhqmnqqQLCLSKSaCSSTSETSKGSGLSLSRPNRvKAARERARERTAKEKEKESNNN 228
                              22344555666666666666666633434444888888888888999996665778999***9988887776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF820512.09E-71898IPR006169GTP1/OBG domain
PfamPF036344.6E-4171223IPR005333Transcription factor, TCP
PROSITE profilePS5136931.06672130IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEVEEIPAQQ PCKFPRIGNG GRGSSSVAKN PDEEDNNGGG GGGGGGREIK TTNHLNGWHH  60
SRIIRVSRAS GGKDRHSKVW TSKGLRDRRV RLSVSTAIQF YDLQDRLGYD QPSKAVEWLI  120
KSAADAIAEL PSLNTDSFPD TPKQLSDEKR GSSEHGLDSV EVDVDDHPNY HHQMNQQQLC  180
LSKSACSSTS ETSKGSGLSL SRPNRVKAAR ERARERTAKE KEKESNNNYN NNESSRIAQA  240
ISQNSSFTEL LTGGIGHNSN NSPTGHHHHQ NCNGEHVLFH KAAAHQQQQM DYSFGSSSLL  300
GLSPTPARNQ HQFSGQIHLG NSLPAQTLFS ISGDHHHRSS SSSSHPEMPQ HFSFVPDYIP  360
VSAAANGGEY NLNFSMSMSS SGGLAGFNGG TLQSNSSSSP SLLSQLQRFS PMESNVPFFI  420
GAAAAPTMEN HHHHHHQFPA GLQLYGDGSR HSDHKGKAKN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2477131155Putative transcription factor PCF6
5zkt_B2e-2477131155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30370.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293547.10.0PREDICTED: transcription factor TCP2
RefseqXP_011460218.10.0PREDICTED: transcription factor TCP2
TrEMBLA0A2P6Q5R30.0A0A2P6Q5R3_ROSCH; Putative transcription factor TCP family
STRINGXP_004293547.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2