PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna30337.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 213aa MW: 22711.9 Da PI: 6.3539 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.7 | 1.3e-15 | 31 | 91 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ +++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ mrna30337.1-v1.0-hybrid 31 RSRWIPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 91 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 105.3 | 3.8e-34 | 30 | 93 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW P+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q mrna30337.1-v1.0-hybrid 30 VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 93 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-8 | 14 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.64E-14 | 24 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.272 | 27 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-6 | 29 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-13 | 31 | 91 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MEDHQGQAGG GQEAKEPNSH SSSEKSTEPV RSRWIPKPEQ ILILESIFNS GMVNPPKEET 60 VRIRKLLEKF GSVGDANVFY WFQNRRSRSR RRQRQLQASL EQRNQLAAAD QQVGGAIQYG 120 SCSSATSFSA PPSPPPPAAA MAFGASTPST FVSNYDLVGG SSSSSCAPMA ADDHFFSVSG 180 QMGFPEIEQH SSSGETSALG PSDASSLHFQ SG* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna30337.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289578.2 | 1e-153 | PREDICTED: WUSCHEL-related homeobox 11 | ||||
Swissprot | Q8GY25 | 1e-37 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A2P6RHC6 | 1e-109 | A0A2P6RHC6_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004289578.1 | 1e-153 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17810.2 | 1e-35 | WUSCHEL related homeobox 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna30337.1-v1.0-hybrid |
Publications ? help Back to Top | |||
---|---|---|---|
|