PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30252.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 533aa    MW: 58072.2 Da    PI: 7.5892
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30252.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.93.9e-07171233163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              eke +r rr   NRe+Ar   +R++a +e L++k++ L+ eN++Lk + e   k++++l+  +
  mrna30252.1-v1.0-hybrid 171 EKEERRIRRILANRESARQTIRRRQALCEDLTKKAADLTLENESLKMKKELALKQYQSLEETN 233
                              78999*******************************************999999999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-5168231No hitNo description
SMARTSM003388.8E-9171235IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082173236IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.23E-6175230No hitNo description
CDDcd147021.29E-11181227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MVCSETTRSF PSSSAASSSS SSSSSVSVGG GEVADPMMVK EELEAAEALA DLAHLAMREN  60
SGAESAGNWG LKGKRAKKRV KSESPPTLSG SNPVPACPDL PQQDEAVIGP AQCERVCINV  120
VAEPVKTETV MSKRIAKSEQ DAELTNSTPI CNTSYPSFNC TKSRRNLTEE EKEERRIRRI  180
LANRESARQT IRRRQALCED LTKKAADLTL ENESLKMKKE LALKQYQSLE ETNRLLKVQM  240
SKARKAEVEE TLDENMSAYV QIPSSSPTNS PFVLFNRPPF TPVFWPSVIQ SSNSIQLQQV  300
PQNPMAIPSN ISLPCNGTAD SSHELGNPIS INGSRTPLYV IPCPWFFPQF EIGNGAQPQS  360
SCPENKQEGA FFNNQGSASS LSRTAAQLDN NQSAFPVRLD VEASGSVEAR PRTDLNENPA  420
QFPLDGGDQH TGGFHPKENG PREIFLSPLL NHGGIASTIK NENGLESDFS ANAEKSMTAC  480
HPFSALPEKN SEPIIYPSRK IADAIAAAEA RKRRKKLTKL KNLHGRQCRM QC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30252.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466783.10.0PREDICTED: uncharacterized protein LOC101299496 isoform X1
TrEMBLA0A2P6RBM30.0A0A2P6RBM3_ROSCH; Putative transcription factor bZIP family
STRINGXP_004303007.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64002834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.11e-58bZIP family protein