PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna30252.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bZIP | ||||||||
Protein Properties | Length: 533aa MW: 58072.2 Da PI: 7.5892 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 21.9 | 3.9e-07 | 171 | 233 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke +r rr NRe+Ar +R++a +e L++k++ L+ eN++Lk + e k++++l+ + mrna30252.1-v1.0-hybrid 171 EKEERRIRRILANRESARQTIRRRQALCEDLTKKAADLTLENESLKMKKELALKQYQSLEETN 233 78999*******************************************999999999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-5 | 168 | 231 | No hit | No description |
SMART | SM00338 | 8.8E-9 | 171 | 235 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.082 | 173 | 236 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.23E-6 | 175 | 230 | No hit | No description |
CDD | cd14702 | 1.29E-11 | 181 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MVCSETTRSF PSSSAASSSS SSSSSVSVGG GEVADPMMVK EELEAAEALA DLAHLAMREN 60 SGAESAGNWG LKGKRAKKRV KSESPPTLSG SNPVPACPDL PQQDEAVIGP AQCERVCINV 120 VAEPVKTETV MSKRIAKSEQ DAELTNSTPI CNTSYPSFNC TKSRRNLTEE EKEERRIRRI 180 LANRESARQT IRRRQALCED LTKKAADLTL ENESLKMKKE LALKQYQSLE ETNRLLKVQM 240 SKARKAEVEE TLDENMSAYV QIPSSSPTNS PFVLFNRPPF TPVFWPSVIQ SSNSIQLQQV 300 PQNPMAIPSN ISLPCNGTAD SSHELGNPIS INGSRTPLYV IPCPWFFPQF EIGNGAQPQS 360 SCPENKQEGA FFNNQGSASS LSRTAAQLDN NQSAFPVRLD VEASGSVEAR PRTDLNENPA 420 QFPLDGGDQH TGGFHPKENG PREIFLSPLL NHGGIASTIK NENGLESDFS ANAEKSMTAC 480 HPFSALPEKN SEPIIYPSRK IADAIAAAEA RKRRKKLTKL KNLHGRQCRM QC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna30252.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466783.1 | 0.0 | PREDICTED: uncharacterized protein LOC101299496 isoform X1 | ||||
TrEMBL | A0A2P6RBM3 | 0.0 | A0A2P6RBM3_ROSCH; Putative transcription factor bZIP family | ||||
STRING | XP_004303007.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6400 | 28 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19490.1 | 1e-58 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna30252.1-v1.0-hybrid |