PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30232.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 368aa    MW: 40258.8 Da    PI: 8.8141
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30232.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC789.3e-25152195144
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                              d+ep rCrRtDGKkWRCs++v++g+k+CErH+hrgr+rsrk++e
  mrna30232.1-v1.0-hybrid 152 DPEPTRCRRTDGKKWRCSKDVVAGQKYCERHVHRGRNRSRKPVE 195
                              79***************************************998 PP
2QLQ52.61.4e-1885121137
                      QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                              s F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i++
  mrna30232.1-v1.0-hybrid  85 SFFSMSQWQELELQALIFRYMLAGAAVPPELLQPIKR 121
                              67*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.0E-1285121IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.22186121IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-1387119IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.796152196IPR014977WRC domain
PfamPF088791.8E-21153195IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDFHLKQWRN QQQHESEEQQ PYPSAAKIPK LETQTHPEPV SGYALPLFVP EPNTKVISTL  60
SAFSESTTTT TAPASSATRF PRMGSFFSMS QWQELELQAL IFRYMLAGAA VPPELLQPIK  120
RSLLHSQFFF QHHLQHYPAL LQSGYWGRGS MDPEPTRCRR TDGKKWRCSK DVVAGQKYCE  180
RHVHRGRNRS RKPVEVTTAT TNAAGGSGAA TDNSVVTVAS SLGKGSNGTH FALSGSSPSI  240
DLLQLSQNQR EVSRGVQSDS HVLRPFFDDW PGQLQEPDNG RSNATSNNNA TSLSISLKLS  300
TGNGVEPGQE SEQPQLNWPM GWGSNHMVSM GGPLAEALRS SNSNSSPTSV LHQLPRGSVS  360
ETSFIST*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30232.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU8158067e-69GU815806.1 Fragaria x ananassa clone ChFaM058 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303017.10.0PREDICTED: growth-regulating factor 3
SwissprotQ8L8A74e-90GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A2P6RBK60.0A0A2P6RBK6_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_004303017.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-74growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]