PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30184.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 307aa    MW: 34180.1 Da    PI: 5.9251
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30184.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS57.82.3e-18189277294
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++lL++cA+ v+s d + a++lL+++++++sp+gd +qR+a y++++L++rla      + +++p   ++++ + +l+a++++ ++
  mrna30184.1-v1.0-hybrid 189 QSLLTQCAKSVASYDRRTANELLKQIRQHSSPYGDGNQRVAYYLANGLEERLAA----AVPSFNPLCLDKMSAAVVLKAYQTYIKA 270
                              579***************************************************....555667777777889************* PP

                     GRAS  88 sPilkfs 94 
                              +P+ k++
  mrna30184.1-v1.0-hybrid 271 CPFKKMA 277
                              ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.43162306IPR005202Transcription factor GRAS
PfamPF035147.9E-16189277IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MPTSTDQNDI FTEFDQQNHE FTDPTSFLSN PNPPPCDDYS CRSFGVSVTS EASRATLQHI  60
REMLMEEELE NRPCMLQDFL ALQAAEKSLE DVLIQQYSPP TNPLLASSIE PSAENSYDFI  120
NHSSNSSSAA RSWDDGSEEG RINKQSAVYA DGYEPPDMLD KLKGGKGGSN GKRTVRKKKD  180
DNREVVDFQS LLTQCAKSVA SYDRRTANEL LKQIRQHSSP YGDGNQRVAY YLANGLEERL  240
AAAVPSFNPL CLDKMSAAVV LKAYQTYIKA CPFKKMASGS CRDGKAEYSM LFHAGNLLHR  300
FRRHCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30184.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P6QJ122e-70A0A2P6QJ12_ROSCH; Uncharacterized protein
STRINGXP_004295970.15e-72(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-29SCARECROW-like 14