PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna30170.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GRAS | ||||||||
Protein Properties | Length: 251aa MW: 28141.4 Da PI: 4.4016 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 71.3 | 1.9e-22 | 153 | 245 | 281 | 373 |
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 r E+e++gre+vn+vaceg+er+ r et+++W+ r ++aGF+++pl+ ++++++k +++ ++ + v+e+ ++++gWk+r mrna30170.1-v1.0-hybrid 153 MRLGFEKEFIGREVVNIVACEGTERTVRPETYKQWQVRNMRAGFRQLPLDREVMNKIKDKVKMGYNPDFVVDEDGRWMLQGWKGRI 238 56778************************************************************999****************** PP GRAS 367 LvsvSaW 373 ++ +W mrna30170.1-v1.0-hybrid 239 IFGSACW 245 ****999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.538 | 1 | 226 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.5E-20 | 153 | 245 | IPR005202 | Transcription factor GRAS |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDPRFSENPN FNDQTLLPDM LNEYRSSEPL KDLSFLDPNP SNSALSSSSS PEGDEFSDSV 60 LKYINQVLME EDMESKPCMF HDPLVLQATE ESLYEVIGGG KYPTSQDQNP LCVDRIVQSP 120 DGGYSSVSFS DSTHSSSSPG PSSDSCMVNA PFMRLGFEKE FIGREVVNIV ACEGTERTVR 180 PETYKQWQVR NMRAGFRQLP LDREVMNKIK DKVKMGYNPD FVVDEDGRWM LQGWKGRIIF 240 GSACWAPSKS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna30170.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024199030.1 | 3e-62 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 5e-41 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2P6QIY8 | 5e-61 | A0A2P6QIY8_ROSCH; Putative transcription factor GRAS family | ||||
STRING | XP_004295968.1 | 2e-56 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14801 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 4e-42 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | mrna30170.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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