PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30159.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 411aa    MW: 44825.6 Da    PI: 7.879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30159.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-16107156255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  mrna30159.1-v1.0-hybrid 107 TYRGVRRRS-NGKWVSEIREPK----KpNRIWLGTFLTPEMAAVAYDVAALALKG 156
                              69****888.8*********94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF134566.3E-83792No hitNo description
SuperFamilySSF541711.31E-19107166IPR016177DNA-binding domain
SMARTSM003801.2E-33107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-29107166IPR001471AP2/ERF domain
PROSITE profilePS5103222.313107164IPR001471AP2/ERF domain
PfamPF008477.7E-9107156IPR001471AP2/ERF domain
PRINTSPR003673.2E-10108119IPR001471AP2/ERF domain
CDDcd000181.04E-28108166No hitNo description
PRINTSPR003673.2E-10146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLSGETLEAF LMALWVIWVE RNNMVRRGLF SMPYKLFIKE AKALRAGMLI CIQQGWQDVE  60
VESDCVNLVH ALQNIDDNLS ITGRIIEDYQ SSKSSSSSTT GPGRHPTYRG VRRRSNGKWV  120
SEIREPKKPN RIWLGTFLTP EMAAVAYDVA ALALKGQDAE LNFPNSASSL PVPASNSSRD  180
IQAAAASAAA AISAAAAAMG VGNLATSSWP STESSHGHML NDHEFVDEDL IFDMPNVLMN  240
MAEGMLLSPP RLDIAGDHDA LATEEHGTLW KICPHCWAVQ FGYFPRLFCS RCFSISLAKR  300
QVKEGESEEN PDSSTPTSTL NATHLFTQSS KKLKSRNPQR EREREAAATT ATTGTLKRAG  360
FNGRVDSAPA GATRDDSRSR PGPFRNPNLP PDGLRQRAAI PGRALQADRS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-141031651073Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30159.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-43ERF family protein