PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30156.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 580aa    MW: 65771.8 Da    PI: 6.8765
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30156.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.16.7e-30127212187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                              rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+ql
  mrna30156.1-v1.0-hybrid 127 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQL 210
                              8***********************************998*******************************98..55667******* PP

                 trihelix  86 ea 87 
                              ea
  mrna30156.1-v1.0-hybrid 211 EA 212
                              85 PP
2trihelix49.89.1e-16420493271
                 trihelix   2 WtkqevlaLiearremeerlrr....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                              W++ e+  L+++r +me+r+++    g++++ lWee+++km+  g+ers   Ckekwe++n   k  ke  +k+
  mrna30156.1-v1.0-hybrid 420 WPECEINRLVQLRGSMESRFSTnqrgGCSDEILWEEIASKMSCLGYERSGMVCKEKWESINYGSKCSKELFSKK 493
                              *********************8444458********************************97776666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.057124187IPR001005SANT/Myb domain
PROSITE profilePS500906.98126185IPR017877Myb-like domain
PfamPF138374.1E-20127213No hitNo description
CDDcd122036.28E-20127192No hitNo description
SMARTSM007173.2416482IPR001005SANT/Myb domain
PfamPF138373.7E-10418491No hitNo description
CDDcd122034.37E-20418487No hitNo description
PROSITE profilePS500906.214420480IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MEMEDQYNLG DLRQLMNGTG RSHFQAIQNP AELFPSSHHH RPQLLAPAHH QHHHHQQHPY  60
EIMMMGRLPT SHDMVPRGIH EFRSADSAGG GGACTNNTVA ATSCLSGGGG LEVEAGGCLG  120
GDGGSGRWPR QETLTLLEIR SRLDHKFKEA NQKGPLWDEV SRIMCEEHGY QRSGKKCREK  180
FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETSNN IAASSLPPDQ SHFVGNNNIN  240
NNNNNNSFRY QAQPSHQDTT TAATYQSTQS VSNSSDFKDS SSSEDNGASA IAPIDDDVLE  300
MKRMRKRRGW KVKIKEFIDV QMRKMMEKQD EWLEKLTSTL EQKERERVLR EEEWRKQEAG  360
RAEREQQFWA KERAWIESRD KALMDALQKL TGSSTSHEVK TSSSTPEQDH EDIVSEQRTW  420
PECEINRLVQ LRGSMESRFS TNQRGGCSDE ILWEEIASKM SCLGYERSGM VCKEKWESIN  480
YGSKCSKELF SKKRKENNLS RPTSCYFGNN ESNSSMYNSQ GGVYATCEMN NHERVDDGSP  540
PANPNVGNAA VVNETCFPFL MGEGDNLWEN YGLKLSKGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30156.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305362.10.0PREDICTED: trihelix transcription factor PTL
TrEMBLA0A2H4NFW70.0A0A2H4NFW7_FRAAN; Trihelix transcription factor GT-2D
STRINGXP_004305362.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-117Trihelix family protein