PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30136.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 293aa    MW: 31859.2 Da    PI: 4.8837
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30136.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026265288123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              ++C+ C++sF++   L++H +  H
  mrna30136.1-v1.0-hybrid 265 FRCNPCNRSFNSDGALQSHTKAkH 288
                              89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.11E-5257287No hitNo description
Gene3DG3DSA:3.30.160.601.0E-4265289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.593265292IPR007087Zinc finger, C2H2
PfamPF128745.2E-5265287No hitNo description
PROSITE patternPS000280267288IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEIRSLRFSD SRCISSTLCI KELLDLVLIL NCTLAGHGLS VEVKSGESVV VEPGTTLVHL  60
SQACLGEVKK GKGSDSISLF VKIGDQKLVI GHLYAEKIPQ LYFDLVFDKK FVLSHDGKTE  120
PKVSLEEAKN EIKSDHKDSS SDDDDDDDDD EEFDQVKSVE DGSEDDDQSS DDDDDSEEEH  180
EETPNKSDYL TMNLFKVEGS NKRAAESSKT PVQKKAKFVT PEKTGGKKGA VHTATPYPSK  240
QAVKKPANSD QTKQQSSNSS GIGAFRCNPC NRSFNSDGAL QSHTKAKHGA AK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30136.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466800.11e-136PREDICTED: histone deacetylase HDT1
TrEMBLM5VQN71e-59M5VQN7_PRUPE; Uncharacterized protein
STRINGXP_004303033.11e-130(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-20histone deacetylase 2C