PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30107.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 581aa    MW: 67217.5 Da    PI: 8.8443
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30107.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.81.5e-2267153191
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              ++Yn+Y + vGFsvrk++s+k ++++ i kr+f+Cs+eg+ +++++     +++r+etr gCk  l++k++kdgk++vtk+e eH+
  mrna30107.1-v1.0-hybrid  67 DYYNQYVRYVGFSVRKRRSNKYRNTDVIWKREFCCSCEGFYQKKNTP----EKKREETRFGCKEILQIKLNKDGKFVVTKFEAEHT 148
                              69***************************************998776....89999****************************** PP

                     FAR1  87 Helap 91 
                              H+l+p
  mrna30107.1-v1.0-hybrid 149 HDLVP 153
                              **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1967153IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MEIEDDEFYS LGETNEELEY DSPEVNDDTQ DPSDNEHFDL SVGEKEVESG NIPVLGMSFK  60
SDEAAYDYYN QYVRYVGFSV RKRRSNKYRN TDVIWKREFC CSCEGFYQKK NTPEKKREET  120
RFGCKEILQI KLNKDGKFVV TKFEAEHTHD LVPRSSSHAM RSQRGIENAQ AGLINQMRLA  180
GFTPSHIFSY LTVETGGQEN LNFLQTDCNN FIQRRRAEFL KKGMTTTQRS ESINKTLKKF  240
FSKNLILCEW VVYYERVLVD RREKERLAEL ATTQRKRKLL SNWKVEGEAA RLYTKASFNC  300
FQEEYQKCLD LIVERGIDDA IIESYVVQRP GNPNLRSRQE HEAIGDIYSE DDQVHENNAN  360
LVLRDPKVKK RKRHGKDKRN NDLGYKKKLK KRSSSAQQEQ EDAPVPLIND LRSKKMPKRI  420
STSIRQEQED TMEYTTYEHE NKGPSNSYDH VQGSVGLVNQ NQANMPFIRH GFPTTFGAQG  480
IPLQYPYGLP PTTFGMQARP NQSHGIPSQY FHGIPPTAST IHPIPSHSLG YQLIPPISDY  540
SLVYSQKKKK KVMAMEKTNG AWRLEKKKSQ NSRAVEDERI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362371LRDPKVKKRK
2369390KRKRHGKDKRNNDLGYKKKLKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30107.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0248369e-45EU024836.1 Fragaria vesca subsp. americana clone fosmid 18A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024195552.11e-106protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2P6SL241e-101A0A2P6SL24_ROSCH; Putative transcription factor FAR family
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-27FAR1-related sequence 5