PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna30099.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 490aa MW: 55596 Da PI: 6.5886 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 74.8 | 1.5e-23 | 109 | 209 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 +Wt+ +v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ mrna30099.1-v1.0-hybrid 109 KWTDTMVRLLIMAVFYIGDEGVSECpdptgkkkngggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGt 194 7****************9999988788888899999999**********************************************5 PP trihelix 72 tsessstcpyfdqle 86 +++++++ +++++e mrna30099.1-v1.0-hybrid 195 ACKVVENQGLLEKME 209 599999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.3E-22 | 107 | 234 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:1900037 | Biological Process | regulation of cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MEGNGLGGGL FPEMRSGMLG LEMPLHQTQN PQNPQNPHHH MHQPQMVSYA HHEADLNHHP 60 QAQQSVKHGY PYAAKPKQIT LSDEDEPGFG ADDSAGDNKR KISPWQRMKW TDTMVRLLIM 120 AVFYIGDEGV SECPDPTGKK KNGGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN 180 KRYKRVNDIL GKGTACKVVE NQGLLEKMEL SSKMKEEVKK LLNSKHLFFR EMCAYHNSCG 240 HGTVGAAGAS GAHNSSPEMA TDQSQVQLQR QSQQQRCFHV SENAHVVANS GRSETEGSKM 300 LKAESGGEDE DEVDYEDDDS EDDDEEEEEG VVEGGPRSQI GHVHEDGDEN DHERAKRPRK 360 GSCFSGPSMK MLMQQLTSEV NGVIQDASKT PWEKKQWMKR RLIQLEEQQV SYRYQSFELE 420 KQRLKWVKYS SKKERDMERA KLENEGRRLE NERMLLLVRQ KELELLDLHH QHPQQNSSNK 480 RSDPSSLTG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna30099.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466806.1 | 0.0 | PREDICTED: uncharacterized protein LOC101312168 | ||||
TrEMBL | A0A2P6RBE1 | 0.0 | A0A2P6RBE1_ROSCH; Putative transcription factor Trihelix family | ||||
STRING | XP_004303047.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4820 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 4e-60 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | mrna30099.1-v1.0-hybrid |