PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30097.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 272aa    MW: 31231 Da    PI: 8.9308
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30097.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.7e-19112165356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k+ +++++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k
  mrna30097.1-v1.0-hybrid 112 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 165
                              56679************************************************9 PP
2HD-ZIP_I/II119.81.4e-38111202192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekk+rls++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yda+++e+++L++ev +
  mrna30097.1-v1.0-hybrid 111 EKKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDAVSKEKQKLQDEVMK 196
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              L++ l+
  mrna30097.1-v1.0-hybrid 197 LKTVLR 202
                              *98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1993169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-20106169IPR009057Homeodomain-like
PROSITE profilePS5007117.07107167IPR001356Homeobox domain
SMARTSM003893.6E-16110171IPR001356Homeobox domain
PfamPF000465.3E-16112165IPR001356Homeobox domain
CDDcd000863.86E-15112168No hitNo description
PRINTSPR000319.6E-5138147IPR000047Helix-turn-helix motif
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PRINTSPR000319.6E-5147163IPR000047Helix-turn-helix motif
PfamPF021834.0E-8167201IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MRESCRLEGD VNGREEKSGL KGLHLNMVPR AQPSMDWTNT NSRQQQQQQH HHHLVSRPEP  60
SFGFLYNYNF DPFPHPGTEM KHHQAMFETP QGSGPSSMER SMMSYGCSSQ EKKKRLSTDQ  120
LESLERSFQE EIKLDPDRKM KLSRDLGLQP RQIAVWFQNR RARWKAKQLE RLYDALKQEY  180
DAVSKEKQKL QDEVMKLKTV LREVARKQVS PGYTEISGEE TVESTSVGAI RSSNKAGGVS  240
QHQIAEGNYI FNVEEYNPVS PPYWGGLPSY P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30097.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303049.11e-179PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR07e-57ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2P6RBE01e-157A0A2P6RBE0_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004303049.11e-178(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-59homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]