PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30067.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 431aa MW: 47477.4 Da PI: 4.9534

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30067.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	54.8	1.9e-17	285	364	1	80
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 l++lL++cAeav+ +d a++lL+++++++sp gd +qRl ++f++AL+arla+++sely +l+++++s s+ a mrna30067.1-v1.0-hybrid 285 LRRLLISCAEAVAVDDRGTASELLKQIRQHSSPFGDYTQRLSHCFANALEARLAGTGSELYTTLATKRASAAAISKFYRA 364 689*************************************************************9999987665555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.482	259	430	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.7E-15	285	364	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MDSPFSEYPN FNDQTLLLDM LNEYPSVDLF DDLSFLDPNP MNSALSSSFS PVGDDGEFSN 60 TVHINRVLME EDMEPTPCLF PDPLVLQPTE ESLYEITGAG KCSTSLDQNP LWVDQNEYGN 120 GNGMVGSYRS ELMVPDEVST KELLVQFDRG AEDGSKFLPR GQLITAEGNK PYTVANSKAG 180 NVVVRTQKNG SEHVRVGSRG KNSHLREEIE LEDGRNNKQS VVYVDDEEGE LSDSIGKALL 240 SGKAVESKED QVCQNGANNG LQQDVLVSQK ACGMKRGNKK EVIDLRRLLI SCAEAVAVDD 300 RGTASELLKQ IRQHSSPFGD YTQRLSHCFA NALEARLAGT GSELYTTLAT KRASAAAISK 360 FYRAHIAVIV DEPSYFVEFV FMANMHRKKK LAHIKGQRGN MAYPMIYRLA GALSKPPVSK 420 LLTVLDMYTH *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MDSPFSEYPN FNDQTLLLDM LNEYPSVDLF DDLSFLDPNP MNSALSSSFS PVGDDGEFSN  60
TVHINRVLME EDMEPTPCLF PDPLVLQPTE ESLYEITGAG KCSTSLDQNP LWVDQNEYGN  120
GNGMVGSYRS ELMVPDEVST KELLVQFDRG AEDGSKFLPR GQLITAEGNK PYTVANSKAG  180
NVVVRTQKNG SEHVRVGSRG KNSHLREEIE LEDGRNNKQS VVYVDDEEGE LSDSIGKALL  240
SGKAVESKED QVCQNGANNG LQQDVLVSQK ACGMKRGNKK EVIDLRRLLI SCAEAVAVDD  300
RGTASELLKQ IRQHSSPFGD YTQRLSHCFA NALEARLAGT GSELYTTLAT KRASAAAISK  360
FYRAHIAVIV DEPSYFVEFV FMANMHRKKK LAHIKGQRGN MAYPMIYRLA GALSKPPVSK  420
LLTVLDMYTH *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30067.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294644.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A2P6QIZ9	1e-178	A0A2P6QIZ9_ROSCH; Putative transcription factor GRAS family
STRING	XP_004294644.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-51	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	mrna30067.1-v1.0-hybrid