PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30051.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 331aa    MW: 38298.6 Da    PI: 7.8651
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30051.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.7e-51261522128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                               pGfrFhPtdeelv +yL++k+++k+++l e ik++diyk++PwdLp ++++a++kewyfF++r +ky+++ r+nr+t sg+Wkat
  mrna30051.1-v1.0-hybrid  26 LPGFRFHPTDEELVGFYLRRKIQKKPISL-ELIKSIDIYKHDPWDLPkATTTAGDKEWYFFCRRGRKYKNSIRPNRVTGSGFWKAT 110
                              69***************************.99***************557777999****************************** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk++++++ + +glkktLv+y+g+a kg+ktdW+mhe+r+
  mrna30051.1-v1.0-hybrid 111 GIDKPIHDSNINCIGLKKTLVYYRGSAGKGTKTDWMMHEFRF 152
                              ********9999****************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5424192IPR003441NAC domain
PROSITE profilePS5100552.54525192IPR003441NAC domain
PfamPF023655.1E-2627151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDGKITTCKD DHHDYHQDHD DEDVTLPGFR FHPTDEELVG FYLRRKIQKK PISLELIKSI  60
DIYKHDPWDL PKATTTAGDK EWYFFCRRGR KYKNSIRPNR VTGSGFWKAT GIDKPIHDSN  120
INCIGLKKTL VYYRGSAGKG TKTDWMMHEF RFPSANDVNN NVHTIRTSCT AISQSANLQE  180
AEIWTLCRIF KRNVSHKKYT PDWRELSAKQ SSSKKCNMTT DQDLNQESRN INREAYIDFG  240
ASNICYEEKK PNVLNHTKYN NASNINNQTL QNAGHQFISG TTTTTATHPY NMDSFTSSYS  300
YADIENHDFF NENWEEFRSV IQLALDPSFM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-452719819171NO APICAL MERISTEM PROTEIN
1ut4_B1e-452719819171NO APICAL MERISTEM PROTEIN
1ut7_A1e-452719819171NO APICAL MERISTEM PROTEIN
1ut7_B1e-452719819171NO APICAL MERISTEM PROTEIN
4dul_A1e-452719819171NAC domain-containing protein 19
4dul_B1e-452719819171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30051.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460724.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK558e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2P6Q8R70.0A0A2P6Q8R7_ROSCH; Putative transcription factor NAM family
STRINGEMJ155901e-130(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-88NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]