PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna30051.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 331aa MW: 38298.6 Da PI: 7.8651 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.6 | 1.7e-51 | 26 | 152 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 pGfrFhPtdeelv +yL++k+++k+++l e ik++diyk++PwdLp ++++a++kewyfF++r +ky+++ r+nr+t sg+Wkat mrna30051.1-v1.0-hybrid 26 LPGFRFHPTDEELVGFYLRRKIQKKPISL-ELIKSIDIYKHDPWDLPkATTTAGDKEWYFFCRRGRKYKNSIRPNRVTGSGFWKAT 110 69***************************.99***************557777999****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk++++++ + +glkktLv+y+g+a kg+ktdW+mhe+r+ mrna30051.1-v1.0-hybrid 111 GIDKPIHDSNINCIGLKKTLVYYRGSAGKGTKTDWMMHEFRF 152 ********9999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-54 | 24 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.545 | 25 | 192 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-26 | 27 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MDGKITTCKD DHHDYHQDHD DEDVTLPGFR FHPTDEELVG FYLRRKIQKK PISLELIKSI 60 DIYKHDPWDL PKATTTAGDK EWYFFCRRGR KYKNSIRPNR VTGSGFWKAT GIDKPIHDSN 120 INCIGLKKTL VYYRGSAGKG TKTDWMMHEF RFPSANDVNN NVHTIRTSCT AISQSANLQE 180 AEIWTLCRIF KRNVSHKKYT PDWRELSAKQ SSSKKCNMTT DQDLNQESRN INREAYIDFG 240 ASNICYEEKK PNVLNHTKYN NASNINNQTL QNAGHQFISG TTTTTATHPY NMDSFTSSYS 300 YADIENHDFF NENWEEFRSV IQLALDPSFM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-45 | 27 | 198 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-45 | 27 | 198 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-45 | 27 | 198 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-45 | 27 | 198 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-45 | 27 | 198 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-45 | 27 | 198 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna30051.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460724.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 8e-83 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2P6Q8R7 | 0.0 | A0A2P6Q8R7_ROSCH; Putative transcription factor NAM family | ||||
STRING | EMJ15590 | 1e-130 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 2e-88 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna30051.1-v1.0-hybrid |